Functional clusters
Information
- Type InterPro
- Description Type 1 protein exporter
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr7 | 5 | CH_acertr_426 | 3 | 3 | 0.00000608328 |
| Arabidopsis lyrata | scaffold_5 | 5 | CH_aly_398 | 3 | 4 | 0.0000297865 |
| Aquilegia oxysepala | CHR03 | 5 | CH_aox_177 | 4 | 6 | 0.000000406791 |
| Amborella trichopoda | AmTr_v1.0_scaffold00049 | 5 | CH_atr_295 | 3 | 3 | 0.00000530131 |
| Brassica carinata | ChrC06 | 5 | CH_bca_1023 | 4 | 13 | 0.00000824216 |
| Brassica napus | C07 | 5 | CH_bna_139 | 6 | 9 | 0.00000000000156903 |
| Brassica oleracea | C5 | 5 | CH_bol_205 | 4 | 4 | 0.0000000241284 |
| Brassica oleracea | C7 | 5 | CH_bol_27 | 8 | 12 | 3.32965e-18 |
| Brassica rapa | A06 | 5 | CH_bra_414 | 3 | 5 | 0.000136996 |
| Camellia sinensis var. sinensis | Chr7 | 5 | CH_camsi_1384 | 3 | 7 | 0.000601002 |
| Camellia sinensis var. sinensis | Chr12 | 5 | CH_camsi_384 | 6 | 37 | 0.0000000115478 |
| Camellia sinensis var. sinensis | Chr2 | 5 | CH_camsi_842 | 3 | 3 | 0.0000172085 |
| Cicer arietinum L. | Ca_LG1_v3 | 5 | CH_car_23 | 5 | 5 | 0.00000000000724886 |
| Citrus clementina | scaffold_6 | 5 | CH_ccl_411 | 3 | 3 | 0.0000045928 |
| Ceratophyllum demersum | 7 | 5 | CH_cde_105 | 4 | 8 | 0.000000500221 |
| Ceratophyllum demersum | 10 | 5 | CH_cde_471 | 3 | 8 | 0.000595733 |
| Carpinus fangiana | Cfa05 | 5 | CH_cfa_338 | 3 | 3 | 0.0000070208 |
| Cardamine hirsuta | NSCAFC.115 | 5 | CH_chi_542 | 3 | 6 | 0.0000801776 |
| Capsella rubella | scaffold_5 | 5 | CH_cru_108 | 5 | 6 | 0.00000000000795646 |
| Daucus carota | DCARv2_Chr3 | 5 | CH_dca_337 | 3 | 3 | 0.0000093964 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 5 | CH_eca_118 | 5 | 7 | 0.0000000000627078 |
| Eucalyptus grandis | Chr09 | 5 | CH_egr_107 | 9 | 10 | 2.55279e-24 |
| Glycine max | Gm19 | 5 | CH_gma_514 | 3 | 3 | 0.0000167909 |
| Helianthus annuus | HanXRQChr14 | 5 | CH_han_101 | 8 | 16 | 1.63199e-16 |
| Hydrangea macrophylla | Hma1.2p1_0849F.1 | 5 | CH_hma_47 | 5 | 7 | 0.0000000000479869 |
| Lupinus albus | Lalb_Chr21 | 5 | CH_lal_321 | 3 | 3 | 0.00000549518 |
| Lonicera japonica | GWHAAZE00000007 | 5 | CH_lonja_853 | 3 | 6 | 0.000142919 |
| Magnolia biondii | Chr04 | 5 | CH_mbi_794 | 3 | 5 | 0.0000544461 |
| Malus domestica | Chr11 | 5 | CH_mdo_674 | 3 | 3 | 0.00000436589 |
| Malus domestica | Chr09 | 5 | CH_mdo_849 | 3 | 5 | 0.0000436312 |
| Medicago truncatula | chr6 | 5 | CH_mtr_125 | 9 | 30 | 2.65487e-17 |
| Medicago truncatula | chr2 | 5 | CH_mtr_441 | 5 | 12 | 0.00000000846256 |
| Olea europaea | chr8 | 5 | CH_oeu_96 | 4 | 4 | 0.0000000048488 |
| Oryza sativa ssp. japonica | chr02 | 5 | CH_osa_552 | 3 | 6 | 0.000128706 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_1048 | 3 | 8 | 0.000232317 |
| Papaver somniferum | NC_039359.1 | 5 | CH_pso_1278 | 3 | 12 | 0.00091171 |
| Populus trichocarpa | Chr15 | 5 | CH_ptr_475 | 3 | 3 | 0.0000130297 |
| Quercus lobata | CM012294 | 5 | CH_qlo_1000 | 3 | 3 | 0.00000223911 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 5 | CH_rch_97 | 8 | 10 | 4.11599e-20 |
| Rhododendron simsii | chr08 | 5 | CH_rsi_119 | 8 | 18 | 1.41869e-16 |
| Salvia bowleyana | GWHASIU00000007 | 5 | CH_sbo_395 | 3 | 3 | 0.00000478196 |
| Sequoiadendron giganteum | chr2 | 5 | CH_sgi_1064 | 4 | 4 | 0.0000000939016 |
| Sequoiadendron giganteum | chr1 | 5 | CH_sgi_334 | 10 | 60 | 0.0000000000000022224 |
| Schrenkiella parvula | ch1-1 | 5 | CH_spa_139 | 4 | 9 | 0.000000713348 |
| Trochodendron aralioides | group0 | 5 | CH_tar_185 | 4 | 4 | 0.0000000113943 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_373 | 5 | CH_tpr_372 | 3 | 3 | 0.00000979883 |
| Vanilla planifolia | JADCNL010000193.1 | 5 | CH_vpl_194 | 4 | 8 | 0.0000010689 |
| Vanilla planifolia | CM028160.1 | 5 | CH_vpl_307 | 3 | 3 | 0.0000188357 |
| Vanilla planifolia | CM028151.1 | 5 | CH_vpl_67 | 5 | 7 | 0.000000000249141 |
| Vitis vinifera | chr14 | 5 | CH_vvi_461 | 3 | 4 | 0.000033622 |
| Zea mays | 4 | 5 | CH_zma_140 | 4 | 4 | 0.0000000209998 |
| Acer truncatum | chr7 | 6 | CH_acertr_426 | 3 | 3 | 0.00000608328 |
| Arabidopsis lyrata | scaffold_5 | 6 | CH_aly_398 | 3 | 4 | 0.0000297865 |
| Aquilegia oxysepala | CHR03 | 6 | CH_aox_177 | 4 | 6 | 0.000000406791 |
| Amborella trichopoda | AmTr_v1.0_scaffold00049 | 6 | CH_atr_295 | 3 | 3 | 0.00000530131 |
| Brassica carinata | ChrC06 | 6 | CH_bca_1023 | 4 | 13 | 0.00000824216 |
| Brassica napus | C07 | 6 | CH_bna_139 | 6 | 9 | 0.00000000000156903 |
| Brassica oleracea | C5 | 6 | CH_bol_205 | 4 | 4 | 0.0000000241284 |
| Brassica oleracea | C7 | 6 | CH_bol_27 | 8 | 12 | 3.32965e-18 |
| Brassica rapa | A06 | 6 | CH_bra_414 | 3 | 5 | 0.000136996 |
| Camellia sinensis var. sinensis | Chr7 | 6 | CH_camsi_1384 | 3 | 7 | 0.000601002 |
| Camellia sinensis var. sinensis | Chr12 | 6 | CH_camsi_384 | 6 | 37 | 0.0000000115478 |
| Camellia sinensis var. sinensis | Chr2 | 6 | CH_camsi_842 | 3 | 3 | 0.0000172085 |
| Cicer arietinum L. | Ca_LG1_v3 | 6 | CH_car_23 | 5 | 5 | 0.00000000000724886 |
| Citrus clementina | scaffold_6 | 6 | CH_ccl_411 | 3 | 3 | 0.0000045928 |
| Ceratophyllum demersum | 7 | 6 | CH_cde_105 | 4 | 8 | 0.000000500221 |
| Ceratophyllum demersum | 10 | 6 | CH_cde_471 | 3 | 8 | 0.000595733 |
| Carpinus fangiana | Cfa05 | 6 | CH_cfa_338 | 3 | 3 | 0.0000070208 |
| Cardamine hirsuta | NSCAFC.115 | 6 | CH_chi_542 | 3 | 6 | 0.0000801776 |
| Cucumis melo | chr04 | 6 | CH_cme_256 | 3 | 3 | 0.0000181512 |
| Capsella rubella | scaffold_5 | 6 | CH_cru_108 | 5 | 6 | 0.00000000000795646 |
| Daucus carota | DCARv2_Chr3 | 6 | CH_dca_337 | 3 | 3 | 0.0000093964 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 6 | CH_eca_118 | 5 | 7 | 0.0000000000627078 |
| Eucalyptus grandis | Chr09 | 6 | CH_egr_107 | 9 | 10 | 2.55279e-24 |
| Fragaria x ananassa | Fvb7-2 | 6 | CH_fan_1288 | 3 | 7 | 0.000982104 |
| Fragaria x ananassa | Fvb4-3 | 6 | CH_fan_65 | 7 | 11 | 0.00000000000000124796 |
| Fragaria x ananassa | Fvb6-1 | 6 | CH_fan_714 | 3 | 3 | 0.0000281134 |
| Glycine max | Gm19 | 6 | CH_gma_514 | 3 | 3 | 0.0000167909 |
| Helianthus annuus | HanXRQChr14 | 6 | CH_han_101 | 8 | 16 | 1.63199e-16 |
| Hydrangea macrophylla | Hma1.2p1_0849F.1 | 6 | CH_hma_47 | 5 | 7 | 0.0000000000479869 |
| Lupinus albus | Lalb_Chr21 | 6 | CH_lal_321 | 3 | 3 | 0.00000549518 |
| Lonicera japonica | GWHAAZE00000007 | 6 | CH_lonja_853 | 3 | 6 | 0.000142919 |
| Magnolia biondii | Chr04 | 6 | CH_mbi_794 | 3 | 5 | 0.0000544461 |
| Malus domestica | Chr11 | 6 | CH_mdo_674 | 3 | 3 | 0.00000436589 |
| Malus domestica | Chr09 | 6 | CH_mdo_849 | 3 | 5 | 0.0000436312 |
| Medicago truncatula | chr6 | 6 | CH_mtr_125 | 9 | 30 | 2.65487e-17 |
| Medicago truncatula | chr2 | 6 | CH_mtr_441 | 5 | 12 | 0.00000000846256 |
| Olea europaea | chr8 | 6 | CH_oeu_96 | 4 | 4 | 0.0000000048488 |
| Oryza sativa ssp. japonica | chr02 | 6 | CH_osa_552 | 3 | 6 | 0.000128706 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_1048 | 3 | 8 | 0.000232317 |
| Papaver somniferum | NC_039359.1 | 6 | CH_pso_1278 | 3 | 12 | 0.00091171 |
| Populus trichocarpa | Chr15 | 6 | CH_ptr_475 | 3 | 3 | 0.0000130297 |
| Quercus lobata | CM012294 | 6 | CH_qlo_1000 | 3 | 3 | 0.00000223911 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 6 | CH_rch_97 | 8 | 10 | 4.11599e-20 |
| Rhododendron simsii | chr08 | 6 | CH_rsi_119 | 8 | 18 | 1.41869e-16 |
| Salvia bowleyana | GWHASIU00000007 | 6 | CH_sbo_395 | 3 | 3 | 0.00000478196 |
| Sequoiadendron giganteum | chr2 | 6 | CH_sgi_1064 | 4 | 4 | 0.0000000939016 |
| Sequoiadendron giganteum | chr1 | 6 | CH_sgi_334 | 10 | 60 | 0.0000000000000022224 |
| Schrenkiella parvula | ch1-1 | 6 | CH_spa_139 | 4 | 9 | 0.000000713348 |
| Trochodendron aralioides | group0 | 6 | CH_tar_185 | 4 | 4 | 0.0000000113943 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_373 | 6 | CH_tpr_372 | 3 | 3 | 0.00000979883 |
| Vanilla planifolia | JADCNL010000193.1 | 6 | CH_vpl_194 | 4 | 8 | 0.0000010689 |
| Vanilla planifolia | CM028160.1 | 6 | CH_vpl_307 | 3 | 3 | 0.0000188357 |
| Vanilla planifolia | CM028151.1 | 6 | CH_vpl_67 | 5 | 7 | 0.000000000249141 |
| Vitis vinifera | chr14 | 6 | CH_vvi_461 | 3 | 4 | 0.000033622 |
| Zea mays | 4 | 6 | CH_zma_140 | 4 | 4 | 0.0000000209998 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |