Functional clusters
Information
- Type InterPro
- Description Aspartic peptidase domain superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00057 | 5 | CH_atr_16 | 15 | 19 | 1.49042e-30 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 5 | CH_bvu_119 | 5 | 5 | 0.00000000268738 |
| Capsicum annuum | PGAv.1.6.scaffold584 | 5 | CH_can_73 | 12 | 21 | 5.87413e-18 |
| Cicer arietinum L. | Ca_LG7_v3 | 5 | CH_car_320 | 10 | 77 | 0.000339814 |
| Corylus avellana | 2 | 5 | CH_cav_380 | 6 | 27 | 0.00000784609 |
| Chara braunii | BFEA01000010 | 5 | CH_cbr_158 | 23 | 67 | 0.0000615881 |
| Davidia involucrata | GWHABJS00000017 | 5 | CH_din_787 | 3 | 3 | 0.000703344 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 5 | CH_eca_387 | 13 | 37 | 0.00000321172 |
| Lupinus albus | Lalb_Chr01 | 5 | CH_lal_9 | 14 | 17 | 2.36094e-26 |
| Lonicera japonica | GWHAAZE00000003 | 5 | CH_lonja_100 | 10 | 10 | 1.1529e-19 |
| Lonicera japonica | GWHAAZE00000009 | 5 | CH_lonja_114 | 12 | 22 | 1.34187e-18 |
| Lonicera japonica | GWHAAZE00000004 | 5 | CH_lonja_127 | 11 | 18 | 1.54954e-17 |
| Malus domestica | Chr01 | 5 | CH_mdo_546 | 5 | 9 | 0.000000533667 |
| Nelumbo nucifera | chr3 | 5 | CH_nnu_42 | 10 | 24 | 0.00000000000000630812 |
| Nicotiana tabacum | Nitab4.5_0001788 | 5 | CH_nta_104 | 4 | 4 | 0.000000443694 |
| Petunia axillaris | Peaxi162Scf00324 | 5 | CH_pax_657 | 3 | 3 | 0.000424384 |
| Punica granatum | NC_045128.1 | 5 | CH_pgr_296 | 5 | 6 | 0.00000211267 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 5 | CH_rch_336 | 7 | 13 | 0.0000000000631041 |
| Solanum lycopersicum | SL4.0ch01 | 5 | CH_sly_111 | 8 | 11 | 0.0000000000000373464 |
| Solanum lycopersicum | SL4.0ch03 | 5 | CH_sly_429 | 4 | 4 | 0.00000301367 |
| Solanum lycopersicum | SL4.0ch06 | 5 | CH_sly_982 | 3 | 3 | 0.000996941 |
| Solanum pennellii | Spenn-ch11 | 5 | CH_spe_174 | 25 | 67 | 0.00000000108635 |
| Solanum pennellii | Spenn-ch03 | 5 | CH_spe_429 | 23 | 80 | 0.00000552959 |
| Solanum pennellii | Spenn-ch06 | 5 | CH_spe_449 | 16 | 39 | 0.00000935216 |
| Solanum pennellii | Spenn-ch07 | 5 | CH_spe_816 | 18 | 62 | 0.000473581 |
| Selenicereus undatus | Scaffold_33680 | 5 | CH_sun_218 | 3 | 3 | 0.000078253 |
| Tripterygium wilfordii | NC_052250.1 | 5 | CH_twi_210 | 6 | 8 | 0.000000503133 |
| Tripterygium wilfordii | NC_052254.1 | 5 | CH_twi_249 | 9 | 40 | 0.00000266784 |
| Vanilla planifolia | CM028150.1 | 5 | CH_vpl_285 | 5 | 17 | 0.0000103168 |
| Amborella trichopoda | AmTr_v1.0_scaffold00057 | 6 | CH_atr_16 | 15 | 19 | 1.49042e-30 |
| Beta vulgaris | Chr6_EL10_PGA_scaffold0 | 6 | CH_bvu_119 | 5 | 5 | 0.00000000268738 |
| Capsicum annuum | PGAv.1.6.scaffold584 | 6 | CH_can_73 | 12 | 21 | 5.87413e-18 |
| Cicer arietinum L. | Ca_LG7_v3 | 6 | CH_car_320 | 10 | 77 | 0.000339814 |
| Corylus avellana | 2 | 6 | CH_cav_380 | 6 | 27 | 0.00000784609 |
| Chara braunii | BFEA01000010 | 6 | CH_cbr_158 | 23 | 67 | 0.0000615881 |
| Cucumis melo | chr07 | 6 | CH_cme_245 | 5 | 13 | 0.0000102873 |
| Davidia involucrata | GWHABJS00000017 | 6 | CH_din_787 | 3 | 3 | 0.000703344 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 6 | CH_eca_387 | 13 | 37 | 0.00000321172 |
| Fragaria x ananassa | Fvb6-3 | 6 | CH_fan_284 | 5 | 5 | 0.0000000323217 |
| Fragaria x ananassa | Fvb6-2 | 6 | CH_fan_627 | 4 | 4 | 0.0000103972 |
| Fragaria x ananassa | Fvb7-1 | 6 | CH_fan_749 | 5 | 13 | 0.0000407434 |
| Lupinus albus | Lalb_Chr01 | 6 | CH_lal_9 | 14 | 17 | 2.36094e-26 |
| Lonicera japonica | GWHAAZE00000003 | 6 | CH_lonja_100 | 10 | 10 | 1.1529e-19 |
| Lonicera japonica | GWHAAZE00000009 | 6 | CH_lonja_114 | 12 | 22 | 1.34187e-18 |
| Lonicera japonica | GWHAAZE00000004 | 6 | CH_lonja_127 | 11 | 18 | 1.54954e-17 |
| Malus domestica | Chr01 | 6 | CH_mdo_546 | 5 | 9 | 0.000000533667 |
| Nelumbo nucifera | chr3 | 6 | CH_nnu_42 | 10 | 24 | 0.00000000000000630812 |
| Nicotiana tabacum | Nitab4.5_0001788 | 6 | CH_nta_104 | 4 | 4 | 0.000000443694 |
| Petunia axillaris | Peaxi162Scf00324 | 6 | CH_pax_657 | 3 | 3 | 0.000424384 |
| Punica granatum | NC_045128.1 | 6 | CH_pgr_296 | 5 | 6 | 0.00000211267 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 6 | CH_rch_336 | 7 | 13 | 0.0000000000631041 |
| Solanum lycopersicum | SL4.0ch01 | 6 | CH_sly_111 | 8 | 11 | 0.0000000000000373464 |
| Solanum lycopersicum | SL4.0ch03 | 6 | CH_sly_429 | 4 | 4 | 0.00000301367 |
| Solanum lycopersicum | SL4.0ch06 | 6 | CH_sly_982 | 3 | 3 | 0.000996941 |
| Solanum pennellii | Spenn-ch11 | 6 | CH_spe_174 | 25 | 67 | 0.00000000108635 |
| Solanum pennellii | Spenn-ch03 | 6 | CH_spe_429 | 23 | 80 | 0.00000552959 |
| Solanum pennellii | Spenn-ch06 | 6 | CH_spe_449 | 16 | 39 | 0.00000935216 |
| Solanum pennellii | Spenn-ch07 | 6 | CH_spe_816 | 18 | 62 | 0.000473581 |
| Selenicereus undatus | Scaffold_33680 | 6 | CH_sun_218 | 3 | 3 | 0.000078253 |
| Tripterygium wilfordii | NC_052250.1 | 6 | CH_twi_210 | 6 | 8 | 0.000000503133 |
| Tripterygium wilfordii | NC_052254.1 | 6 | CH_twi_249 | 9 | 40 | 0.00000266784 |
| Vanilla planifolia | CM028150.1 | 6 | CH_vpl_285 | 5 | 17 | 0.0000103168 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |