Functional clusters
Information
- Type InterPro
- Description DNA-binding pseudobarrel domain superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group20 | 5 | CH_ach_19 | 10 | 26 | 0.0000000000000335849 |
| Actinidia chinensis | Lachesis_group16 | 5 | CH_ach_199 | 4 | 4 | 0.00000513037 |
| Actinidia chinensis | Lachesis_group24 | 5 | CH_ach_211 | 5 | 11 | 0.00000784969 |
| Aquilegia oxysepala | CHR07 | 5 | CH_aox_263 | 4 | 4 | 0.0000122897 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 5 | CH_arhy_813 | 5 | 7 | 0.0000166233 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 5 | CH_arhy_860 | 8 | 44 | 0.0000313942 |
| Brassica carinata | ChrC02 | 5 | CH_bca_771 | 5 | 6 | 0.00000118729 |
| Brassica napus | A09 | 5 | CH_bna_436 | 5 | 5 | 0.0000000818443 |
| Brassica rapa | A09 | 5 | CH_bra_46 | 7 | 7 | 0.00000000000164782 |
| Camellia sinensis var. sinensis | Chr7 | 5 | CH_camsi_128 | 9 | 23 | 0.0000000000000113582 |
| Camellia sinensis var. sinensis | Chr2 | 5 | CH_camsi_374 | 5 | 6 | 0.00000000734059 |
| Capsicum annuum | PGAv.1.6.scaffold220 | 5 | CH_can_336 | 5 | 8 | 0.000000497321 |
| Capsicum annuum | PGAv.1.6.scaffold352 | 5 | CH_can_875 | 3 | 3 | 0.000873435 |
| Citrus clementina | scaffold_5 | 5 | CH_ccl_286 | 5 | 6 | 0.0000000666684 |
| Citrus clementina | scaffold_8 | 5 | CH_ccl_482 | 7 | 61 | 0.0000443403 |
| Carpinus fangiana | Cfa08 | 5 | CH_cfa_26 | 14 | 21 | 1.67976e-25 |
| Carya illinoinensis | Chr02 | 5 | CH_cil_777 | 3 | 3 | 0.000529509 |
| Corchorus olitorius | AWUE01014740.1 | 5 | CH_col_8 | 11 | 13 | 5.11393e-19 |
| Carica papaya | supercontig_132 | 5 | CH_cpa_76 | 5 | 5 | 0.00000000193785 |
| Capsella rubella | scaffold_6 | 5 | CH_cru_501 | 5 | 15 | 0.000170552 |
| Daucus carota | DCARv2_B9 | 5 | CH_dca_378 | 8 | 44 | 0.0000375478 |
| Daucus carota | DCARv2_Chr7 | 5 | CH_dca_464 | 7 | 32 | 0.000105928 |
| Davidia involucrata | GWHABJS00000009 | 5 | CH_din_55 | 10 | 19 | 6.47482e-17 |
| Davidia involucrata | GWHABJS00000004 | 5 | CH_din_66 | 9 | 15 | 0.0000000000000013847 |
| Eucalyptus grandis | Chr09 | 5 | CH_egr_379 | 7 | 8 | 0.00000000000117789 |
| Erythranthe guttata | scaffold_8 | 5 | CH_egut_745 | 3 | 3 | 0.000966201 |
| Gossypium hirsutum | A10 | 5 | CH_ghi_192 | 8 | 10 | 0.000000000000357611 |
| Gossypium hirsutum | A03 | 5 | CH_ghi_271 | 7 | 9 | 0.0000000000680284 |
| Gossypium hirsutum | D02 | 5 | CH_ghi_308 | 6 | 6 | 0.00000000045121 |
| Gossypium hirsutum | D04 | 5 | CH_ghi_39 | 17 | 22 | 7.37607e-32 |
| Gossypium hirsutum | D10 | 5 | CH_ghi_397 | 6 | 8 | 0.0000000125423 |
| Gossypium hirsutum | A03 | 5 | CH_ghi_465 | 5 | 5 | 0.000000106608 |
| Gossypium hirsutum | D02 | 5 | CH_ghi_912 | 4 | 5 | 0.00012512 |
| Glycine max | Gm20 | 5 | CH_gma_271 | 5 | 5 | 0.0000000112344 |
| Glycine max | Gm11 | 5 | CH_gma_455 | 4 | 4 | 0.00000389434 |
| Gossypium raimondii | Chr12 | 5 | CH_gra_20 | 17 | 22 | 1.43265e-32 |
| Gossypium raimondii | Chr11 | 5 | CH_gra_203 | 6 | 8 | 0.00000000503324 |
| Gossypium raimondii | Chr05 | 5 | CH_gra_232 | 5 | 5 | 0.0000000447164 |
| Lonicera japonica | GWHAAZE00000002 | 5 | CH_lonja_143 | 8 | 9 | 2.51588e-16 |
| Magnolia biondii | Chr15 | 5 | CH_mbi_79 | 9 | 22 | 6.56277e-17 |
| Malus domestica | Chr15 | 5 | CH_mdo_777 | 4 | 6 | 0.0000207734 |
| Manihot esculenta | Chromosome07 | 5 | CH_mes_30 | 17 | 27 | 2.34217e-30 |
| Medicago truncatula | chr1 | 5 | CH_mtr_59 | 13 | 15 | 6.64262e-25 |
| Medicago truncatula | chr1 | 5 | CH_mtr_683 | 9 | 69 | 0.00000100089 |
| Nelumbo nucifera | chr4 | 5 | CH_nnu_427 | 4 | 9 | 0.000127708 |
| Prunus persica | Pp07 | 5 | CH_ppe_39 | 12 | 12 | 7.14902e-25 |
| Populus trichocarpa | Chr03 | 5 | CH_ptr_15 | 24 | 42 | 6.01261e-41 |
| Populus trichocarpa | Chr04 | 5 | CH_ptr_21 | 16 | 17 | 2.68021e-32 |
| Populus trichocarpa | Chr15 | 5 | CH_ptr_58 | 13 | 23 | 1.96797e-20 |
| Quercus lobata | CM012294 | 5 | CH_qlo_646 | 9 | 41 | 0.00000000762378 |
| Rhododendron simsii | chr13 | 5 | CH_rsi_73 | 11 | 13 | 5.31499e-21 |
| Salix brachista | GWHAAZH00000011 | 5 | CH_sbr_20 | 15 | 17 | 7.92406e-28 |
| Salix brachista | GWHAAZH00000015 | 5 | CH_sbr_48 | 11 | 14 | 2.3598e-18 |
| Salix brachista | GWHAAZH00000003 | 5 | CH_sbr_6 | 25 | 46 | 5.84234e-40 |
| Solanum lycopersicum | SL4.0ch01 | 5 | CH_sly_926 | 4 | 10 | 0.000836874 |
| Solanum pennellii | Spenn-ch02 | 5 | CH_spe_369 | 5 | 11 | 0.00000164059 |
| Solanum pennellii | Spenn-ch01 | 5 | CH_spe_749 | 4 | 10 | 0.000316428 |
| Solanum tuberosum | ST4.03ch02 | 5 | CH_stu_139 | 7 | 8 | 0.000000000000362359 |
| Trochodendron aralioides | group12 | 5 | CH_tar_400 | 4 | 5 | 0.00000539073 |
| Theobroma cacao | Chromosome_2 | 5 | CH_tca_11 | 19 | 23 | 5.73285e-38 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 5 | CH_tpr_125 | 9 | 27 | 0.00000000104095 |
| Actinidia chinensis | Lachesis_group20 | 6 | CH_ach_19 | 10 | 26 | 0.0000000000000335849 |
| Actinidia chinensis | Lachesis_group16 | 6 | CH_ach_199 | 4 | 4 | 0.00000513037 |
| Actinidia chinensis | Lachesis_group24 | 6 | CH_ach_211 | 5 | 11 | 0.00000784969 |
| Aquilegia oxysepala | CHR07 | 6 | CH_aox_263 | 4 | 4 | 0.0000122897 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.12 | 6 | CH_arhy_813 | 5 | 7 | 0.0000166233 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.05 | 6 | CH_arhy_860 | 8 | 44 | 0.0000313942 |
| Brassica carinata | ChrC02 | 6 | CH_bca_771 | 5 | 6 | 0.00000118729 |
| Brassica napus | A09 | 6 | CH_bna_436 | 5 | 5 | 0.0000000818443 |
| Brassica rapa | A09 | 6 | CH_bra_46 | 7 | 7 | 0.00000000000164782 |
| Camellia sinensis var. sinensis | Chr7 | 6 | CH_camsi_128 | 9 | 23 | 0.0000000000000113582 |
| Camellia sinensis var. sinensis | Chr2 | 6 | CH_camsi_374 | 5 | 6 | 0.00000000734059 |
| Capsicum annuum | PGAv.1.6.scaffold220 | 6 | CH_can_336 | 5 | 8 | 0.000000497321 |
| Capsicum annuum | PGAv.1.6.scaffold352 | 6 | CH_can_875 | 3 | 3 | 0.000873435 |
| Citrus clementina | scaffold_5 | 6 | CH_ccl_286 | 5 | 6 | 0.0000000666684 |
| Citrus clementina | scaffold_8 | 6 | CH_ccl_482 | 7 | 61 | 0.0000443403 |
| Carpinus fangiana | Cfa08 | 6 | CH_cfa_26 | 14 | 21 | 1.67976e-25 |
| Carya illinoinensis | Chr02 | 6 | CH_cil_777 | 3 | 3 | 0.000529509 |
| Corchorus olitorius | AWUE01014740.1 | 6 | CH_col_8 | 11 | 13 | 5.11393e-19 |
| Carica papaya | supercontig_132 | 6 | CH_cpa_76 | 5 | 5 | 0.00000000193785 |
| Capsella rubella | scaffold_6 | 6 | CH_cru_501 | 5 | 15 | 0.000170552 |
| Daucus carota | DCARv2_B9 | 6 | CH_dca_378 | 8 | 44 | 0.0000375478 |
| Daucus carota | DCARv2_Chr7 | 6 | CH_dca_464 | 7 | 32 | 0.000105928 |
| Davidia involucrata | GWHABJS00000009 | 6 | CH_din_55 | 10 | 19 | 6.47482e-17 |
| Davidia involucrata | GWHABJS00000004 | 6 | CH_din_66 | 9 | 15 | 0.0000000000000013847 |
| Eucalyptus grandis | Chr09 | 6 | CH_egr_379 | 7 | 8 | 0.00000000000117789 |
| Erythranthe guttata | scaffold_8 | 6 | CH_egut_745 | 3 | 3 | 0.000966201 |
| Fragaria x ananassa | Fvb1-4 | 6 | CH_fan_146 | 7 | 9 | 0.0000000000342595 |
| Gossypium hirsutum | A10 | 6 | CH_ghi_192 | 8 | 10 | 0.000000000000357611 |
| Gossypium hirsutum | A03 | 6 | CH_ghi_271 | 7 | 9 | 0.0000000000680284 |
| Gossypium hirsutum | D02 | 6 | CH_ghi_308 | 6 | 6 | 0.00000000045121 |
| Gossypium hirsutum | D04 | 6 | CH_ghi_39 | 17 | 22 | 7.37607e-32 |
| Gossypium hirsutum | D10 | 6 | CH_ghi_397 | 6 | 8 | 0.0000000125423 |
| Gossypium hirsutum | A03 | 6 | CH_ghi_465 | 5 | 5 | 0.000000106608 |
| Gossypium hirsutum | D02 | 6 | CH_ghi_912 | 4 | 5 | 0.00012512 |
| Glycine max | Gm20 | 6 | CH_gma_271 | 5 | 5 | 0.0000000112344 |
| Glycine max | Gm11 | 6 | CH_gma_455 | 4 | 4 | 0.00000389434 |
| Gossypium raimondii | Chr12 | 6 | CH_gra_20 | 17 | 22 | 1.43265e-32 |
| Gossypium raimondii | Chr11 | 6 | CH_gra_203 | 6 | 8 | 0.00000000503324 |
| Gossypium raimondii | Chr05 | 6 | CH_gra_232 | 5 | 5 | 0.0000000447164 |
| Lonicera japonica | GWHAAZE00000002 | 6 | CH_lonja_143 | 8 | 9 | 2.51588e-16 |
| Magnolia biondii | Chr15 | 6 | CH_mbi_79 | 9 | 22 | 6.56277e-17 |
| Malus domestica | Chr15 | 6 | CH_mdo_777 | 4 | 6 | 0.0000207734 |
| Manihot esculenta | Chromosome07 | 6 | CH_mes_30 | 17 | 27 | 2.34217e-30 |
| Medicago truncatula | chr1 | 6 | CH_mtr_59 | 13 | 15 | 6.64262e-25 |
| Medicago truncatula | chr1 | 6 | CH_mtr_683 | 9 | 69 | 0.00000100089 |
| Nelumbo nucifera | chr4 | 6 | CH_nnu_427 | 4 | 9 | 0.000127708 |
| Prunus persica | Pp07 | 6 | CH_ppe_39 | 12 | 12 | 7.14902e-25 |
| Populus trichocarpa | Chr03 | 6 | CH_ptr_15 | 24 | 42 | 6.01261e-41 |
| Populus trichocarpa | Chr04 | 6 | CH_ptr_21 | 16 | 17 | 2.68021e-32 |
| Populus trichocarpa | Chr15 | 6 | CH_ptr_58 | 13 | 23 | 1.96797e-20 |
| Quercus lobata | CM012294 | 6 | CH_qlo_646 | 9 | 41 | 0.00000000762378 |
| Rhododendron simsii | chr13 | 6 | CH_rsi_73 | 11 | 13 | 5.31499e-21 |
| Salix brachista | GWHAAZH00000011 | 6 | CH_sbr_20 | 15 | 17 | 7.92406e-28 |
| Salix brachista | GWHAAZH00000015 | 6 | CH_sbr_48 | 11 | 14 | 2.3598e-18 |
| Salix brachista | GWHAAZH00000003 | 6 | CH_sbr_6 | 25 | 46 | 5.84234e-40 |
| Solanum lycopersicum | SL4.0ch01 | 6 | CH_sly_926 | 4 | 10 | 0.000836874 |
| Solanum pennellii | Spenn-ch02 | 6 | CH_spe_369 | 5 | 11 | 0.00000164059 |
| Solanum pennellii | Spenn-ch01 | 6 | CH_spe_749 | 4 | 10 | 0.000316428 |
| Solanum tuberosum | ST4.03ch02 | 6 | CH_stu_139 | 7 | 8 | 0.000000000000362359 |
| Trochodendron aralioides | group12 | 6 | CH_tar_400 | 4 | 5 | 0.00000539073 |
| Theobroma cacao | Chromosome_2 | 6 | CH_tca_11 | 19 | 23 | 5.73285e-38 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 6 | CH_tpr_125 | 9 | 27 | 0.00000000104095 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |