Functional clusters

Information

  • Type InterPro
  • Description Reverse transcriptase domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr7 5 CH_acertr_938 9 47 0.000550132
Camellia sinensis var. sinensis Chr13 5 CH_camsi_997 5 13 0.0000924848
Chenopodium quinoa C_Quinoa_Scaffold_3850 5 CH_cqu_870 3 5 0.000307364
Chlamydomonas reinhardtii chromosome_1 5 CH_cre_43 6 13 0.00000029085
Chlamydomonas reinhardtii chromosome_6 5 CH_cre_7 8 9 0.0000000000000303407
Chlamydomonas reinhardtii chromosome_3 5 CH_cre_85 5 12 0.0000298864
Chlamydomonas reinhardtii chromosome_16 5 CH_cre_99 5 14 0.0000749731
Erigeron canadensis Conyza_canadensis_scaffold:5 5 CH_eca_263 22 80 0.000000109593
Erigeron canadensis Conyza_canadensis_scaffold:3 5 CH_eca_326 21 79 0.000000701729
Erigeron canadensis Conyza_canadensis_scaffold:8 5 CH_eca_389 20 77 0.00000336769
Erigeron canadensis Conyza_canadensis_scaffold:5 5 CH_eca_558 19 80 0.0000522571
Helianthus annuus HanXRQChr01 5 CH_han_729 4 4 0.0000164409
Magnolia biondii Chr08 5 CH_mbi_426 6 9 0.00000018097
Physcomitrium patens Chr11 5 CH_ppa_19 6 20 0.000000000221206
Sapria himalayana scaffold103_1210301 5 CH_shi_26 19 80 0.000000000000227019
Sapria himalayana scaffold71_2458239 5 CH_shi_358 10 48 0.0000654419
Solanum pennellii Spenn-ch01 5 CH_spe_152 26 79 0.000000000295534
Solanum pennellii Spenn-ch06 5 CH_spe_265 15 29 0.0000000611032
Solanum pennellii Spenn-ch10 5 CH_spe_477 17 52 0.0000157022
Acer truncatum chr7 6 CH_acertr_938 9 47 0.000550132
Camellia sinensis var. sinensis Chr13 6 CH_camsi_997 5 13 0.0000924848
Chenopodium quinoa C_Quinoa_Scaffold_3850 6 CH_cqu_870 3 5 0.000307364
Chlamydomonas reinhardtii chromosome_1 6 CH_cre_43 6 13 0.00000029085
Chlamydomonas reinhardtii chromosome_6 6 CH_cre_7 8 9 0.0000000000000303407
Chlamydomonas reinhardtii chromosome_3 6 CH_cre_85 5 12 0.0000298864
Chlamydomonas reinhardtii chromosome_16 6 CH_cre_99 5 14 0.0000749731
Erigeron canadensis Conyza_canadensis_scaffold:5 6 CH_eca_263 22 80 0.000000109593
Erigeron canadensis Conyza_canadensis_scaffold:3 6 CH_eca_326 21 79 0.000000701729
Erigeron canadensis Conyza_canadensis_scaffold:8 6 CH_eca_389 20 77 0.00000336769
Erigeron canadensis Conyza_canadensis_scaffold:5 6 CH_eca_558 19 80 0.0000522571
Helianthus annuus HanXRQChr01 6 CH_han_729 4 4 0.0000164409
Magnolia biondii Chr08 6 CH_mbi_426 6 9 0.00000018097
Physcomitrium patens Chr11 6 CH_ppa_19 6 20 0.000000000221206
Sapria himalayana scaffold103_1210301 6 CH_shi_26 19 80 0.000000000000227019
Sapria himalayana scaffold71_2458239 6 CH_shi_358 10 48 0.0000654419
Solanum pennellii Spenn-ch01 6 CH_spe_152 26 79 0.000000000295534
Solanum pennellii Spenn-ch06 6 CH_spe_265 15 29 0.0000000611032
Solanum pennellii Spenn-ch10 6 CH_spe_477 17 52 0.0000157022

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001