Functional clusters

Information

  • Type Gene Ontology
  • Description perinuclear endoplasmic reticulum membrane

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 3 CH_arhy_112 6 32 0.000000000000123072
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 3 CH_arhy_234 4 13 0.0000000120784
Brassica carinata ChrB01 3 CH_bca_181 3 4 0.0000000274167
Camellia sinensis var. sinensis Chr7 3 CH_camsi_320 3 4 0.000000706432
Coffea canephora chr8 3 CH_ccan_367 3 49 0.000554179
Citrus clementina scaffold_6 3 CH_ccl_44 6 16 0.00000000000000468322
Carya illinoinensis Chr05 3 CH_cil_469 2 2 0.000371897
Eucalyptus grandis Chr07 3 CH_egr_352 7 77 0.00000000255121
Eucalyptus grandis scaffold_13 3 CH_egr_42 12 30 1.50283e-27
Erythranthe guttata scaffold_7 3 CH_egut_55 7 20 0.000000000000028826
Lotus japonicus chr2 3 CH_lja_38 4 5 0.00000000000548506
Lactuca sativa Lsat_1_v8_lg_2 3 CH_lsa_13 10 38 2.51218e-23
Malus domestica Chr07 3 CH_mdo_18 9 36 2.84824e-21
Manihot esculenta Chromosome04 3 CH_mes_108 5 13 0.0000000000619213
Oryza sativa ssp. japonica chr11 3 CH_osa_27 5 6 0.00000000000000210063
Punica granatum NC_045130.1 3 CH_pgr_75 5 12 0.0000000000473986
Prunus persica Pp06 3 CH_ppe_202 3 6 0.000000166926
Papaver somniferum NW_020620714.1 3 CH_pso_173 5 20 0.00000000196457
Quercus lobata 10 3 CH_qlo_165 7 31 0.0000000000000251221
Quercus lobata 5 3 CH_qlo_598 4 24 0.00000595851
Sequoiadendron giganteum chr6 3 CH_sgi_1370 3 11 0.000901869
Tripterygium wilfordii NC_052234.1 3 CH_twi_111 3 5 0.000000186725
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_88 3 3 0.0000000129529
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 4 CH_arhy_112 6 32 0.000000000000123072
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 4 CH_arhy_234 4 13 0.0000000120784
Brassica carinata ChrB01 4 CH_bca_181 3 4 0.0000000274167
Camellia sinensis var. sinensis Chr7 4 CH_camsi_320 3 4 0.000000706432
Coffea canephora chr8 4 CH_ccan_367 3 49 0.000554179
Citrus clementina scaffold_6 4 CH_ccl_44 6 16 0.00000000000000468322
Carya illinoinensis Chr05 4 CH_cil_469 2 2 0.000371897
Eucalyptus grandis Chr07 4 CH_egr_352 7 77 0.00000000255121
Eucalyptus grandis scaffold_13 4 CH_egr_42 12 30 1.50283e-27
Erythranthe guttata scaffold_7 4 CH_egut_55 7 20 0.000000000000028826
Lotus japonicus chr2 4 CH_lja_38 4 5 0.00000000000548506
Lactuca sativa Lsat_1_v8_lg_2 4 CH_lsa_13 10 38 2.51218e-23
Malus domestica Chr07 4 CH_mdo_18 9 36 2.84824e-21
Manihot esculenta Chromosome04 4 CH_mes_108 5 13 0.0000000000619213
Oryza sativa ssp. japonica chr11 4 CH_osa_27 5 6 0.00000000000000210063
Punica granatum NC_045130.1 4 CH_pgr_75 5 12 0.0000000000473986
Prunus persica Pp06 4 CH_ppe_202 3 6 0.000000166926
Papaver somniferum NW_020620714.1 4 CH_pso_173 5 20 0.00000000196457
Quercus lobata 10 4 CH_qlo_165 7 31 0.0000000000000251221
Quercus lobata 5 4 CH_qlo_598 4 24 0.00000595851
Sequoiadendron giganteum chr6 4 CH_sgi_1370 3 11 0.000901869
Tripterygium wilfordii NC_052234.1 4 CH_twi_111 3 5 0.000000186725
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_88 3 3 0.0000000129529

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001