Functional clusters
Information
- Type Gene Ontology
- Description cellulose microfibril organization
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr9 | 3 | CH_acertr_79 | 4 | 4 | 0.00000000407439 |
| Actinidia chinensis | Lachesis_group3 | 3 | CH_ach_26 | 4 | 4 | 0.00000000608354 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 3 | CH_arhy_428 | 3 | 3 | 0.0000204091 |
| Brassica carinata | ChrC03 | 3 | CH_bca_521 | 3 | 4 | 0.0000474035 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 3 | CH_bvu_126 | 3 | 3 | 0.0000037427 |
| Capsicum annuum | PGAv.1.6.scaffold1228 | 3 | CH_can_258 | 3 | 3 | 0.0000266166 |
| Cicer arietinum L. | Ca_LG1_v3 | 3 | CH_car_219 | 3 | 10 | 0.000886799 |
| Corylus avellana | 2 | 3 | CH_cav_143 | 4 | 10 | 0.00000109734 |
| Citrus clementina | scaffold_3 | 3 | CH_ccl_115 | 4 | 4 | 0.00000000301427 |
| Carpinus fangiana | Cfa08 | 3 | CH_cfa_168 | 3 | 3 | 0.0000048182 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1189 | 3 | CH_cqu_122 | 4 | 4 | 0.0000000130597 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1177 | 3 | CH_cqu_160 | 4 | 6 | 0.00000019567 |
| Davidia involucrata | GWHABJS00000012 | 3 | CH_din_175 | 3 | 3 | 0.00000363566 |
| Durio zibethinus | NW_019167838.1 | 3 | CH_dzi_179 | 3 | 3 | 0.0000130829 |
| Erythranthe guttata | scaffold_8 | 3 | CH_egut_143 | 4 | 5 | 0.0000000224374 |
| Fragaria x ananassa | Fvb5-1 | 3 | CH_fan_131 | 4 | 5 | 0.0000000643113 |
| Fragaria x ananassa | Fvb3-4 | 3 | CH_fan_305 | 3 | 3 | 0.0000224332 |
| Fragaria vesca | Fvb5 | 3 | CH_fve_88 | 4 | 4 | 0.00000000297183 |
| Lotus japonicus | chr1 | 3 | CH_lja_182 | 3 | 3 | 0.0000155247 |
| Lonicera japonica | GWHAAZE00000081 | 3 | CH_lonja_185 | 4 | 4 | 0.0000000031222 |
| Malus domestica | Chr14 | 3 | CH_mdo_327 | 3 | 3 | 0.00000706654 |
| Medicago truncatula | chr6 | 3 | CH_mtr_395 | 3 | 3 | 0.00000448449 |
| Punica granatum | NC_045134.1 | 3 | CH_pgr_216 | 3 | 3 | 0.000011233 |
| Prunus persica | Pp05 | 3 | CH_ppe_152 | 4 | 4 | 0.00000000381103 |
| Prunus persica | Pp03 | 3 | CH_ppe_260 | 3 | 3 | 0.00000681132 |
| Pisum sativum | chr1LG6 | 3 | CH_psa_152 | 3 | 3 | 0.00000395512 |
| Populus trichocarpa | Chr15 | 3 | CH_ptr_278 | 3 | 3 | 0.0000130297 |
| Phaseolus vulgaris | Chr08 | 3 | CH_pvu_190 | 3 | 3 | 0.0000107699 |
| Quercus lobata | 10 | 3 | CH_qlo_581 | 3 | 3 | 0.0000045582 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 3 | CH_rch_270 | 4 | 7 | 0.0000000840673 |
| Solanum lycopersicum | SL4.0ch03 | 3 | CH_sly_298 | 3 | 3 | 0.0000188826 |
| Solanum pennellii | Spenn-ch03 | 3 | CH_spe_105 | 4 | 4 | 0.00000000540556 |
| Trochodendron aralioides | group4 | 3 | CH_tar_26 | 6 | 7 | 0.0000000000000729177 |
| Theobroma cacao | Chromosome_3 | 3 | CH_tca_65 | 5 | 6 | 0.0000000000150512 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_34 | 3 | CH_tpr_184 | 3 | 4 | 0.0000332996 |
| Vitis vinifera | chr17 | 3 | CH_vvi_210 | 3 | 3 | 0.00000708182 |
| Acer truncatum | chr9 | 4 | CH_acertr_79 | 4 | 4 | 0.00000000407439 |
| Actinidia chinensis | Lachesis_group3 | 4 | CH_ach_26 | 4 | 4 | 0.00000000608354 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.04 | 4 | CH_arhy_428 | 3 | 3 | 0.0000204091 |
| Brassica carinata | ChrC03 | 4 | CH_bca_521 | 3 | 4 | 0.0000474035 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 4 | CH_bvu_126 | 3 | 3 | 0.0000037427 |
| Capsicum annuum | PGAv.1.6.scaffold1228 | 4 | CH_can_258 | 3 | 3 | 0.0000266166 |
| Cicer arietinum L. | Ca_LG1_v3 | 4 | CH_car_219 | 3 | 10 | 0.000886799 |
| Corylus avellana | 2 | 4 | CH_cav_143 | 4 | 10 | 0.00000109734 |
| Citrus clementina | scaffold_3 | 4 | CH_ccl_115 | 4 | 4 | 0.00000000301427 |
| Carpinus fangiana | Cfa08 | 4 | CH_cfa_168 | 3 | 3 | 0.0000048182 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1189 | 4 | CH_cqu_122 | 4 | 4 | 0.0000000130597 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1177 | 4 | CH_cqu_160 | 4 | 6 | 0.00000019567 |
| Davidia involucrata | GWHABJS00000012 | 4 | CH_din_175 | 3 | 3 | 0.00000363566 |
| Durio zibethinus | NW_019167838.1 | 4 | CH_dzi_179 | 3 | 3 | 0.0000130829 |
| Erythranthe guttata | scaffold_8 | 4 | CH_egut_143 | 4 | 5 | 0.0000000224374 |
| Fragaria x ananassa | Fvb5-1 | 4 | CH_fan_131 | 4 | 5 | 0.0000000643113 |
| Fragaria x ananassa | Fvb3-4 | 4 | CH_fan_305 | 3 | 3 | 0.0000224332 |
| Fragaria vesca | Fvb5 | 4 | CH_fve_88 | 4 | 4 | 0.00000000297183 |
| Lotus japonicus | chr1 | 4 | CH_lja_182 | 3 | 3 | 0.0000155247 |
| Lonicera japonica | GWHAAZE00000081 | 4 | CH_lonja_185 | 4 | 4 | 0.0000000031222 |
| Malus domestica | Chr14 | 4 | CH_mdo_327 | 3 | 3 | 0.00000706654 |
| Medicago truncatula | chr6 | 4 | CH_mtr_395 | 3 | 3 | 0.00000448449 |
| Punica granatum | NC_045134.1 | 4 | CH_pgr_216 | 3 | 3 | 0.000011233 |
| Prunus persica | Pp05 | 4 | CH_ppe_152 | 4 | 4 | 0.00000000381103 |
| Prunus persica | Pp03 | 4 | CH_ppe_260 | 3 | 3 | 0.00000681132 |
| Pisum sativum | chr1LG6 | 4 | CH_psa_152 | 3 | 3 | 0.00000395512 |
| Populus trichocarpa | Chr15 | 4 | CH_ptr_278 | 3 | 3 | 0.0000130297 |
| Phaseolus vulgaris | Chr08 | 4 | CH_pvu_190 | 3 | 3 | 0.0000107699 |
| Quercus lobata | 10 | 4 | CH_qlo_581 | 3 | 3 | 0.0000045582 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 4 | CH_rch_270 | 4 | 7 | 0.0000000840673 |
| Solanum lycopersicum | SL4.0ch03 | 4 | CH_sly_298 | 3 | 3 | 0.0000188826 |
| Solanum pennellii | Spenn-ch03 | 4 | CH_spe_105 | 4 | 4 | 0.00000000540556 |
| Trochodendron aralioides | group4 | 4 | CH_tar_26 | 6 | 7 | 0.0000000000000729177 |
| Theobroma cacao | Chromosome_3 | 4 | CH_tca_65 | 5 | 6 | 0.0000000000150512 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_34 | 4 | CH_tpr_184 | 3 | 4 | 0.0000332996 |
| Vitis vinifera | chr17 | 4 | CH_vvi_210 | 3 | 3 | 0.00000708182 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |