Functional clusters

Information

  • Type MapMan
  • Description Protein biosynthesis.ribosome biogenesis.rRNA biosynthesis.post-transcriptional rRNA modification.pseudouridylation.H/ACA small nucleolar ribonucleoprotein (snoRNP) rRNA pseudouridylation complex.pseudouridine synthase component Nap57/CBF5

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Avicennia marina ScioBoG_52287_HRSCAF_52434 1 CH_ama_115 2 2 0.000517331
Camellia sinensis var. sinensis Chr4 1 CH_camsi_62 5 13 0.0000000000000426733
Eutrema salsugineum scaffold_3 1 CH_esa_313 2 5 0.000761412
Magnolia biondii Chr11 1 CH_mbi_82 4 12 0.000000000170088
Malus domestica Chr16 1 CH_mdo_599 2 3 0.00034128
Physcomitrium patens Chr22 1 CH_ppa_125 2 3 0.000183812
Sequoiadendron giganteum chr6 1 CH_sgi_1052 2 2 0.000146145
Utricularia gibba unitig_8 1 CH_ugi_200 2 2 0.000220378
Avicennia marina ScioBoG_52287_HRSCAF_52434 2 CH_ama_115 2 2 0.000517331
Camellia sinensis var. sinensis Chr4 2 CH_camsi_62 5 13 0.0000000000000426733
Eutrema salsugineum scaffold_3 2 CH_esa_313 2 5 0.000761412
Magnolia biondii Chr11 2 CH_mbi_82 4 12 0.000000000170088
Malus domestica Chr16 2 CH_mdo_599 2 3 0.00034128
Physcomitrium patens Chr22 2 CH_ppa_125 2 3 0.000183812
Sequoiadendron giganteum chr6 2 CH_sgi_1052 2 2 0.000146145
Utricularia gibba unitig_8 2 CH_ugi_200 2 2 0.000220378

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001