Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Email Address (optional)

Data Settings

The selection modi are exclusive: please choose either Gene selection or Species selection.

Gene Selection
Species Selection

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
CSS0050293	Camellia sinensis var. sinensis	HOM05D039899	ORTHO05D113295	6.6e-35	150.2	79	100.0
CSS0035952	Camellia sinensis var. sinensis	HOM05D039899	ORTHO05D110467	1.7e-30	135.6	79	92.4
CSS0049126	Camellia sinensis var. sinensis	HOM05D039899	ORTHO05D111112	1.4e-29	132.5	79	92.4
CSS0036031	Camellia sinensis var. sinensis	HOM05D000825	ORTHO05D003462	3.4e-07	58.2	65	56.9
Lj3A1064T101	Lonicera japonica	HOM05D000825	ORTHO05D003462	3.4e-07	58.2	65	56.9
Cc11_g16580	Coffea canephora	HOM05D000825	ORTHO05D003462	7.6e-07	57.0	65	55.4
Rhsim12G0035300	Rhododendron simsii	HOM05D000825	ORTHO05D003462	7.6e-07	57.0	65	55.4
Rhsim12G0105500	Rhododendron simsii	HOM05D000825	ORTHO05D003462	7.6e-07	57.0	65	55.4
Prupe.5G154900	Prunus persica	HOM05D000825	ORTHO05D003462	9.9e-07	56.6	43	72.1
CSS0007515	Camellia sinensis var. sinensis	HOM05D000825	ORTHO05D003462	1.3e-06	56.2	65	53.8
CSS0016665	Camellia sinensis var. sinensis	HOM05D000825	ORTHO05D003462	1.3e-06	56.2	65	53.8
vmacro01087	Vaccinium macrocarpon	HOM05D000825	ORTHO05D003462	1.3e-06	56.2	32	90.6
Actinidia08089	Actinidia chinensis	HOM05D000825	ORTHO05D003462	1.7e-06	55.8	40	75.0
Oeu041688.5	Olea europaea	HOM05D000825	ORTHO05D003462	1.7e-06	55.8	65	55.4
Prupe.1G233400	Prunus persica	HOM05D000825	ORTHO05D003462	1.7e-06	55.8	65	55.4
vmacro16135	Vaccinium macrocarpon	HOM05D000825	ORTHO05D003462	1.7e-06	55.8	65	53.8
MD13G1112000	Malus domestica	HOM05D000825	ORTHO05D003462	2.2e-06	55.5	65	55.4
Actinidia30677	Actinidia chinensis	HOM05D000825	ORTHO05D003462	2.9e-06	55.1	65	53.8
Manes.13G015500	Manihot esculenta	HOM05D000825	ORTHO05D003462	2.9e-06	55.1	65	52.3
Oeu038668.1	Olea europaea	HOM05D000825	ORTHO05D003462	2.9e-06	55.1	65	55.4
Sabra10G0049100	Salix brachista	HOM05D000825	ORTHO05D003462	2.9e-06	55.1	65	53.8
arahy.Tifrunner.gnm1.ann1.40PBNN	Arachis hypogaea	HOM05D000825	ORTHO05D003462	3.8e-06	54.7	65	55.4
arahy.Tifrunner.gnm1.ann1.C6G01Q	Arachis hypogaea	HOM05D000825	ORTHO05D003462	3.8e-06	54.7	65	55.4
arahy.Tifrunner.gnm1.ann1.PBD1JU	Arachis hypogaea	HOM05D000825	ORTHO05D003462	3.8e-06	54.7	65	55.4
Lj6g0005936	Lotus japonicus	HOM05D000825	ORTHO05D003462	3.8e-06	54.7	65	55.4
Potri.010G056100	Populus trichocarpa	HOM05D000825	ORTHO05D003462	3.8e-06	54.7	65	53.8
CiPaw.06G099600	Carya illinoinensis	HOM05D000825	ORTHO05D003462	4.9e-06	54.3	65	53.8
AUR62025864	Chenopodium quinoa	HOM05D000825	ORTHO05D003462	4.9e-06	54.3	67	50.7
Dinv11101	Davidia involucrata	HOM05D000825	ORTHO05D003462	4.9e-06	54.3	65	53.8
Migut.K00696	Erythranthe guttata	HOM05D000825	ORTHO05D003462	4.9e-06	54.3	65	53.8
MD16G1111600	Malus domestica	HOM05D000825	ORTHO05D003462	4.9e-06	54.3	65	53.8
TWI36G1132	Tripterygium wilfordii	HOM05D000825	ORTHO05D003462	4.9e-06	54.3	65	53.8
Cfa009313	Carpinus fangiana	HOM05D000825	ORTHO05D003462	6.4e-06	53.9	65	53.8
Haze_12367	Corylus avellana	HOM05D000825	ORTHO05D003462	6.4e-06	53.9	65	53.8
Duzib248G1423	Durio zibethinus	HOM05D000825	ORTHO05D003462	6.4e-06	53.9	65	53.8
Duzib268G0933	Durio zibethinus	HOM05D000825	ORTHO05D003462	6.4e-06	53.9	65	53.8
Lalb_Chr07g0187311	Lupinus albus	HOM05D000825	ORTHO05D003462	6.4e-06	53.9	65	53.8
Lalb_Chr23g0277951	Lupinus albus	HOM05D000825	ORTHO05D003462	6.4e-06	53.9	65	53.8
Manes.12G014900	Manihot esculenta	HOM05D000825	ORTHO05D003462	6.4e-06	53.9	65	53.8
Nn3g16546	Nelumbo nucifera	HOM05D000825	ORTHO05D003462	6.4e-06	53.9	65	53.8
Nn4g22413	Nelumbo nucifera	HOM05D000825	ORTHO05D003462	6.4e-06	53.9	65	53.8
Ca_16484_v3	Cicer arietinum L.	HOM05D000825	ORTHO05D003462	8.4e-06	53.5	65	55.4
COL.COLO4_23619	Corchorus olitorius	HOM05D000825	ORTHO05D003462	8.4e-06	53.5	65	52.3
Duzib251G0887	Durio zibethinus	HOM05D000825	ORTHO05D003462	8.4e-06	53.5	65	53.8
Duzib268G0854	Durio zibethinus	HOM05D000825	ORTHO05D003462	8.4e-06	53.5	65	53.8
Glyma.11G248000	Glycine max	HOM05D000825	ORTHO05D003462	8.4e-06	53.5	65	53.8
Glyma.18G009200	Glycine max	HOM05D000825	ORTHO05D003462	8.4e-06	53.5	65	53.8
Gohir.D12G151800	Gossypium hirsutum	HOM05D000825	ORTHO05D003462	8.4e-06	53.5	65	53.8
Gorai.008G164200	Gossypium raimondii	HOM05D000825	ORTHO05D003462	8.4e-06	53.5	65	53.8
Manes.16G048001	Manihot esculenta	HOM05D000825	ORTHO05D003462	8.4e-06	53.5	65	52.3
Phvul.001G259400	Phaseolus vulgaris	HOM05D000825	ORTHO05D003462	8.4e-06	53.5	65	53.8
Rhsim12G0172600	Rhododendron simsii	HOM05D000825	ORTHO05D003462	8.4e-06	53.5	66	51.5
Sabra08G0136400	Salix brachista	HOM05D000825	ORTHO05D003462	8.4e-06	53.5	65	52.3
vmacro16653	Vaccinium macrocarpon	HOM05D000825	ORTHO05D003462	8.4e-06	53.5	66	51.5
vmacro16661	Vaccinium macrocarpon	HOM05D000825	ORTHO05D003462	8.4e-06	53.5	66	51.5
vmacro16715	Vaccinium macrocarpon	HOM05D000825	ORTHO05D003462	8.4e-06	53.5	66	51.5
VMungo1383G2063	Vigna mungo	HOM05D000825	ORTHO05D003462	8.4e-06	53.5	65	53.8

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm

Tree construction algorithm

Edit MSA alignment

Interactive Phylogenetics Module

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Data Settings

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