Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism Homologous gene familyOrthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0039618 Camellia sinensis var. sinensis HOM05D026604 ORTHO05D010247 9.6e-65 250.4 162 100.0
CSS0045054 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D010247 1.0e-45 187.2 127 81.9
Rhsim06G0236400 Rhododendron simsii HOM05D000054 ORTHO05D000286 2.2e-24 116.3 80 76.2
Aqoxy1G01465 Aquilegia oxysepala HOM05D000054 ORTHO05D000286 9.1e-23 110.9 87 62.1
vmacro11712 Vaccinium macrocarpon HOM05D000054 ORTHO05D000286 1.0e-21 107.5 104 60.6
CAN.G943.46 Capsicum annuum HOM05D000054 ORTHO05D000286 1.3e-21 107.1 90 64.4
Solyc07g066550.4 Solanum lycopersicum HOM05D000054 ORTHO05D000286 1.7e-21 106.7 82 68.3
Sopen07g034710 Solanum pennellii HOM05D000054 ORTHO05D000171 1.7e-21 106.7 82 68.3
CAN.G943.47 Capsicum annuum HOM05D000054 ORTHO05D000286 2.2e-21 106.3 90 63.3
Thecc.06G134900 Theobroma cacao HOM05D000054 ORTHO05D000286 6.5e-21 104.8 104 53.8
Thecc.06G134600 Theobroma cacao HOM05D000054 ORTHO05D000286 1.2e-19 100.5 104 51.9
TAR626G0314 Trochodendron aralioides HOM05D000054 ORTHO05D000286 1.2e-19 100.5 99 56.6
Thhalv10000587m.g Eutrema salsugineum HOM05D000054 ORTHO05D000286 6.1e-19 98.2 99 48.5
MBI18_g31328_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D010247 6.1e-19 98.2 112 52.7
FvH4_3g15430 Fragaria vesca HOM05D000054 ORTHO05D000286 1.4e-18 97.1 109 57.8
Gohir.A07G117800 Gossypium hirsutum HOM05D000054 ORTHO05D000286 6.8e-18 94.7 94 54.3
MBI14_g17546_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D000171 1.2e-17 94.0 70 61.4
Gohir.D01G080900 Gossypium hirsutum HOM05D000054 ORTHO05D000286 1.5e-17 93.6 115 51.3
MBI18_g46064_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D010247 2.6e-17 92.8 70 60.0
SEGI_09417 Sequoiadendron giganteum HOM05D013967 ORTHO05D010247 3.4e-17 92.4 97 50.5
PSO339G0122 Papaver somniferum HOM05D000054 ORTHO05D000286 4.4e-17 92.0 115 47.0
ATR0763G021 Amborella trichopoda HOM05D000054 ORTHO05D000286 9.8e-17 90.9 73 61.6
Gorai.011G052100 Gossypium raimondii HOM05D000054 ORTHO05D000286 4.8e-16 88.6 89 53.9
Gohir.A10G048100 Gossypium hirsutum HOM05D000054 ORTHO05D000286 1.1e-15 87.4 89 52.8
QL04p065535 Quercus lobata HOM05D000054 ORTHO05D000286 1.1e-15 87.4 92 53.3
MBI18_g22098_MAGBIO Magnolia biondii HOM05D013967 ORTHO05D010247 1.6e-14 83.6 110 46.4
Rhsim06G0240800 Rhododendron simsii HOM05D000054 ORTHO05D000286 1.6e-14 83.6 48 89.6
ATR0763G177 Amborella trichopoda HOM05D013967 ORTHO05D010247 2.0e-14 83.2 60 65.0
SalBow7G2553 Salvia bowleyana HOM05D000054 ORTHO05D000171 2.0e-14 83.2 100 43.0
Gorai.011G052000 Gossypium raimondii HOM05D000054 ORTHO05D000286 4.5e-14 82.0 89 49.4
SEGI_03448 Sequoiadendron giganteum HOM05D026604 ORTHO05D010247 1.3e-13 80.5 87 48.3
Lj2A339T47 Lonicera japonica HOM05D000054 ORTHO05D000171 1.7e-13 80.1 74 58.1
DCAR_017104 Daucus carota HOM05D000054 ORTHO05D000286 3.8e-13 79.0 82 52.4
Os04g0616400 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D000286 6.5e-13 78.2 89 50.6
HanXRQChr11g0335741 Helianthus annuus HOM05D000054 ORTHO05D000286 1.1e-12 77.4 88 46.6
HanXRQChr11g0335791 Helianthus annuus HOM05D000054 ORTHO05D000171 1.1e-12 77.4 88 46.6
RcHm_v2.0_Chr5g0025931 Rosa chinensis HOM05D000054 ORTHO05D000286 1.1e-12 77.4 56 73.2
Rhsim06G0240900 Rhododendron simsii HOM05D000054 ORTHO05D000286 2.5e-12 76.3 55 72.7
Os04g0616500 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D000286 4.2e-12 75.5 89 48.3
Prupe.4G136900 Prunus persica HOM05D000054 ORTHO05D000171 5.5e-12 75.1 52 75.0
RcHm_v2.0_Chr2g0114861 Rosa chinensis HOM05D000054 ORTHO05D010039 9.5e-12 74.3 57 70.2
GSVIVG01029728001 Vitis vinifera HOM05D013967 ORTHO05D010247 9.5e-12 74.3 68 58.8
RcHm_v2.0_Chr2g0114641 Rosa chinensis HOM05D000054 ORTHO05D000286 2.7e-11 72.8 58 65.5
Os04g0616700 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D000171 4.7e-11 72.0 89 46.1
FAN25G2179 Fragaria x ananassa HOM05D000054 ORTHO05D000171 6.1e-11 71.6 55 67.3
Rhsim09G0135300 Rhododendron simsii HOM05D000054 ORTHO05D000286 8.0e-11 71.2 59 67.8
Gorai.002G105800 Gossypium raimondii HOM05D000054 ORTHO05D000286 1.4e-10 70.5 54 70.4
Gorai.011G052400 Gossypium raimondii HOM05D000054 ORTHO05D000286 1.4e-10 70.5 73 50.7
Lsat_1_v5_gn_7_111881 Lactuca sativa HOM05D000054 ORTHO05D000286 1.4e-10 70.5 54 66.7
RcHm_v2.0_Chr2g0114711 Rosa chinensis HOM05D000054 ORTHO05D000286 3.0e-10 69.3 55 69.1
Lsat_1_v5_gn_7_111801 Lactuca sativa HOM05D000054 ORTHO05D000286 4.0e-10 68.9 59 57.6
SalBow5G0857 Salvia bowleyana HOM05D000054 ORTHO05D000286 4.0e-10 68.9 73 53.4
SalBow5G1041 Salvia bowleyana HOM05D000054 ORTHO05D000286 4.0e-10 68.9 73 53.4
Thecc.06G134700 Theobroma cacao HOM05D000054 ORTHO05D000286 4.0e-10 68.9 89 46.1
Gohir.A10G047633 Gossypium hirsutum HOM05D000054 ORTHO05D000286 5.2e-10 68.6 79 45.6
HanXRQChr04g0123581 Helianthus annuus HOM05D000054 ORTHO05D010247 6.8e-10 68.2 102 38.2
MBI18_g01865_MAGBIO Magnolia biondii HOM05D000054 ORTHO05D000171 6.8e-10 68.2 53 60.4
Os04g0616300 Oryza sativa ssp. japonica HOM05D000054 ORTHO05D000171 8.8e-10 67.8 89 46.1
RcHm_v2.0_Chr5g0073701 Rosa chinensis HOM05D000054 ORTHO05D000286 8.8e-10 67.8 48 66.7
MELO3C026689.2 Cucumis melo HOM05D000054 ORTHO05D000286 1.2e-09 67.4 56 62.5
RcHm_v2.0_Chr5g0073781 Rosa chinensis HOM05D000054 ORTHO05D000286 1.2e-09 67.4 48 66.7
FvH4_1g21070 Fragaria vesca HOM05D000054 ORTHO05D000286 1.5e-09 67.0 51 70.6
FAN26G2319 Fragaria x ananassa HOM05D000054 ORTHO05D000286 1.5e-09 67.0 51 70.6
Gohir.A10G048300 Gossypium hirsutum HOM05D000054 ORTHO05D000286 1.5e-09 67.0 70 52.9
Glyma.08G120302 Glycine max HOM05D000054 ORTHO05D000171 2.0e-09 66.6 115 36.5
PSO675G6484 Papaver somniferum HOM05D000054 ORTHO05D000286 2.0e-09 66.6 51 66.7
Gohir.A09G076200 Gossypium hirsutum HOM05D000054 ORTHO05D000286 3.4e-09 65.9 90 44.4
Gohir.D09G076200 Gossypium hirsutum HOM05D000054 ORTHO05D000286 3.4e-09 65.9 90 44.4
BraA09t37635Z Brassica rapa HOM05D013967 ORTHO05D010247 4.4e-09 65.5 98 37.8
TWI38G2401 Tripterygium wilfordii HOM05D000054 ORTHO05D051487 5.7e-09 65.1 99 37.4
RcHm_v2.0_Chr2g0114821 Rosa chinensis HOM05D000054 ORTHO05D000286 7.5e-09 64.7 53 64.2
BcaC03g14910 Brassica carinata HOM05D000054 ORTHO05D010039 9.8e-09 64.3 58 50.0
BcaC03g16566 Brassica carinata HOM05D000054 ORTHO05D000286 9.8e-09 64.3 54 57.4
Thhalv10019658m.g Eutrema salsugineum HOM05D000054 ORTHO05D000286 9.8e-09 64.3 55 58.2
Rhsim06G0236300 Rhododendron simsii HOM05D000054 ORTHO05D000286 9.8e-09 64.3 46 73.9
C02p43800 Brassica napus HOM05D000054 ORTHO05D000286 1.7e-08 63.5 59 55.9
CARHR029070 Cardamine hirsuta HOM05D000054 ORTHO05D000171 1.7e-08 63.5 98 42.9
RcHm_v2.0_Chr5g0025891 Rosa chinensis HOM05D000054 ORTHO05D000286 2.2e-08 63.2 43 74.4
COL.COLO4_30909 Corchorus olitorius HOM05D000773 ORTHO05D000286 2.8e-08 62.8 89 46.1
DCAR_019924 Daucus carota HOM05D000054 ORTHO05D000171 2.8e-08 62.8 111 37.8
FvH4_3g40970 Fragaria vesca HOM05D000054 ORTHO05D000286 3.7e-08 62.4 53 60.4
BcaB04g20959 Brassica carinata HOM05D000054 ORTHO05D000171 4.9e-08 62.0 90 38.9
BcaC06g35460 Brassica carinata HOM05D000054 ORTHO05D000171 4.9e-08 62.0 102 38.2
C09p25650 Brassica napus HOM05D000054 ORTHO05D000286 4.9e-08 62.0 58 51.7
CSS0038481 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 4.9e-08 62.0 98 39.8
FAN11G0840 Fragaria x ananassa HOM05D000054 ORTHO05D000286 4.9e-08 62.0 46 71.7
Rhsim06G0241100 Rhododendron simsii HOM05D000054 ORTHO05D000286 4.9e-08 62.0 40 87.5
FAN21G3696 Fragaria x ananassa HOM05D000054 ORTHO05D000286 6.3e-08 61.6 53 60.4
CANSAT80G0992 Cannabis sativa HOM05D000054 ORTHO05D000286 8.3e-08 61.2 57 57.9
AUR62016382 Chenopodium quinoa HOM05D000054 ORTHO05D000171 8.3e-08 61.2 84 35.7
TAR624G0357 Trochodendron aralioides HOM05D000054 ORTHO05D000171 8.3e-08 61.2 115 38.3
Thecc.07G163600 Theobroma cacao HOM05D000054 ORTHO05D000171 1.1e-07 60.8 45 71.1
TAR626G1233 Trochodendron aralioides HOM05D000054 ORTHO05D000286 1.1e-07 60.8 52 65.4
FvH4_3g15410 Fragaria vesca HOM05D000054 ORTHO05D000171 1.4e-07 60.5 45 68.9
FvH4_3g15440 Fragaria vesca HOM05D000054 ORTHO05D000286 1.4e-07 60.5 45 68.9
FAN16G3517 Fragaria x ananassa HOM05D000054 ORTHO05D000286 1.4e-07 60.5 46 67.4
HPP92_005932 Vanilla planifolia HOM05D000054 ORTHO05D000286 1.4e-07 60.5 54 53.7
C02p23880 Brassica napus HOM05D000054 ORTHO05D000286 1.8e-07 60.1 49 55.1
Duzib187G0821 Durio zibethinus HOM05D000054 ORTHO05D000171 1.8e-07 60.1 47 66.0
FAN21G2765 Fragaria x ananassa HOM05D000054 ORTHO05D000286 1.8e-07 60.1 45 68.9
Gorai.001G131900 Gossypium raimondii HOM05D000054 ORTHO05D000286 1.8e-07 60.1 51 60.8
HPP92_005934 Vanilla planifolia HOM05D000054 ORTHO05D000171 1.8e-07 60.1 54 51.9
Ca_14421_v3 Cicer arietinum L. HOM05D013967 ORTHO05D010247 2.4e-07 59.7 74 50.0
Ca_30389_v3 Cicer arietinum L. HOM05D013967 ORTHO05D010247 2.4e-07 59.7 74 50.0
Hma1.2p1_0151F.1_g067490 Hydrangea macrophylla HOM05D000054 ORTHO05D010039 2.4e-07 59.7 46 67.4
MD15G1239300 Malus domestica HOM05D000054 ORTHO05D010247 2.4e-07 59.7 145 33.8
Rhsim02G0089100 Rhododendron simsii HOM05D000054 ORTHO05D000171 2.4e-07 59.7 85 38.8
Sabra11G0060300 Salix brachista HOM05D000054 ORTHO05D010247 2.4e-07 59.7 97 37.1
MD05G1295000 Malus domestica HOM05D000054 ORTHO05D002584 3.1e-07 59.3 100 38.0
RcHm_v2.0_Chr2g0124231 Rosa chinensis HOM05D000054 ORTHO05D000286 3.1e-07 59.3 52 61.5
BraA08t32065Z Brassica rapa HOM05D000054 ORTHO05D000286 4.1e-07 58.9 42 61.9
DCAR_005176 Daucus carota HOM05D000054 ORTHO05D000171 4.1e-07 58.9 98 35.7
MD03G1247100 Malus domestica HOM05D000054 ORTHO05D000171 4.1e-07 58.9 120 35.0
Hma1.2p1_2310F.1_g319540 Hydrangea macrophylla HOM05D000054 ORTHO05D010247 5.4e-07 58.5 110 34.5
QL04p077484 Quercus lobata HOM05D000054 ORTHO05D000286 5.4e-07 58.5 79 50.6
Eucgr.K01777 Eucalyptus grandis HOM05D000054 ORTHO05D000171 7.0e-07 58.2 92 39.1
GSVIVG01020735001 Vitis vinifera HOM05D000021 ORTHO05D440116 7.0e-07 58.2 109 33.9
MELO3C009538.2 Cucumis melo HOM05D000517 ORTHO05D003374 9.2e-07 57.8 92 38.0
Lsat_1_v5_gn_7_111781 Lactuca sativa HOM05D000054 ORTHO05D000286 9.2e-07 57.8 44 65.9
Lj5C9T12 Lonicera japonica HOM05D000053 ORTHO05D000035 1.2e-06 57.4 105 35.2
Nitab4.5_0002633g0050 Nicotiana tabacum HOM05D000054 ORTHO05D000286 1.2e-06 57.4 46 65.2
Sabra11G0056800 Salix brachista HOM05D000054 ORTHO05D005077 1.2e-06 57.4 105 34.3
Gorai.007G330000 Gossypium raimondii HOM05D000054 ORTHO05D000127 1.6e-06 57.0 102 33.3
Sp1g41780 Schrenkiella parvula HOM05D000054 ORTHO05D000286 2.0e-06 56.6 35 71.4
Sabra11G0060200 Salix brachista HOM05D000054 ORTHO05D000171 2.7e-06 56.2 76 39.5
Sabra11G0094000 Salix brachista HOM05D026604 ORTHO05D010247 2.7e-06 56.2 69 42.0
Sabra11G0094600 Salix brachista HOM05D026604 ORTHO05D010247 2.7e-06 56.2 69 42.0
CSS0019456 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 3.5e-06 55.8 91 44.0
Duzib160G0729 Durio zibethinus HOM05D000054 ORTHO05D000286 3.5e-06 55.8 51 60.8
Duzib268G1389 Durio zibethinus HOM05D000054 ORTHO05D000171 3.5e-06 55.8 84 38.1
Nitab4.5_0013354g0010 Nicotiana tabacum HOM05D000054 ORTHO05D000171 3.5e-06 55.8 115 37.4
Os08g0202300 Oryza sativa ssp. japonica HOM05D013967 ORTHO05D010247 3.5e-06 55.8 82 41.5
RhsimUnG0239700 Rhododendron simsii HOM05D013967 ORTHO05D010247 3.5e-06 55.8 42 71.4
COL.COLO4_38354 Corchorus olitorius HOM05D000054 ORTHO05D000286 4.5e-06 55.5 47 63.8
Haze_16592 Corylus avellana HOM05D000311 ORTHO05D000183 4.5e-06 55.5 95 37.9
Duzib235G0871 Durio zibethinus HOM05D000054 ORTHO05D000286 4.5e-06 55.5 52 57.7
Lj5C587T0 Lonicera japonica HOM05D000053 ORTHO05D000035 4.5e-06 55.5 111 35.1
Sed0000475 Sechium edule HOM05D000517 ORTHO05D003374 4.5e-06 55.5 91 38.5
CSS0032317 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D010247 5.9e-06 55.1 98 35.7
Duzib268G0777 Durio zibethinus HOM05D000054 ORTHO05D000171 5.9e-06 55.1 84 39.3
FAN16G1129 Fragaria x ananassa HOM05D000054 ORTHO05D000171 5.9e-06 55.1 61 50.8
HanXRQChr11g0335781 Helianthus annuus HOM05D000054 ORTHO05D000286 5.9e-06 55.1 51 56.9
Potri.004G063500 Populus trichocarpa HOM05D000054 ORTHO05D000171 5.9e-06 55.1 87 37.9
Prupe.6G126100 Prunus persica HOM05D000054 ORTHO05D000171 5.9e-06 55.1 87 35.6
FvH4_3g17940 Fragaria vesca HOM05D000054 ORTHO05D000171 7.7e-06 54.7 59 50.8
FAN21G4054 Fragaria x ananassa HOM05D000054 ORTHO05D000171 7.7e-06 54.7 73 43.8
HanXRQChr09g0258651 Helianthus annuus HOM05D000054 ORTHO05D000171 7.7e-06 54.7 95 37.9
HanXRQChr11g0335111 Helianthus annuus HOM05D000054 ORTHO05D000286 7.7e-06 54.7 48 54.2

Acer truncatum (0 genes)
Actinidia chinensis (0 genes)
Aethionema arabicum (0 genes)
Amaranthus hybridus (0 genes)
Amborella trichopoda (2 genes)
Anthoceros agrestis (0 genes)
Aquilegia oxysepala (1 genes)
Arabidopsis lyrata (0 genes)
Arabidopsis thaliana (0 genes)
Arachis hypogaea (0 genes)
Avicennia marina (0 genes)
Beta vulgaris (0 genes)
Brassica carinata (4 genes)
Brassica napus (3 genes)
Brassica oleracea (0 genes)
Brassica rapa (2 genes)
Camellia sinensis var. sinensis (5 genes)
Cannabis sativa (1 genes)
Capsella rubella (0 genes)
Capsicum annuum (2 genes)
Cardamine hirsuta (1 genes)
Carica papaya (0 genes)
Carpinus fangiana (0 genes)
Carya illinoinensis (0 genes)
Ceratophyllum demersum (0 genes)
Chara braunii (0 genes)
Chenopodium quinoa (1 genes)
Chlamydomonas reinhardtii (0 genes)
Cicer arietinum L. (2 genes)
Citrullus lanatus (0 genes)
Citrus clementina (0 genes)
Coffea canephora (0 genes)
Corchorus olitorius (2 genes)
Corylus avellana (1 genes)
Cucumis melo (2 genes)
Cucumis sativus L. (0 genes)
Daucus carota (3 genes)
Davidia involucrata (0 genes)
Durio zibethinus (5 genes)
Erigeron canadensis (0 genes)
Erythranthe guttata (0 genes)
Eucalyptus grandis (1 genes)
Eutrema salsugineum (2 genes)
Fragaria vesca (6 genes)
Fragaria x ananassa (8 genes)
Glycine max (1 genes)
Gossypium hirsutum (7 genes)
Gossypium raimondii (6 genes)
Helianthus annuus (6 genes)
Hydrangea macrophylla (2 genes)
Lactuca sativa (3 genes)
Lonicera japonica (3 genes)
Lotus japonicus (0 genes)
Lupinus albus (0 genes)
Magnolia biondii (5 genes)
Malus domestica (3 genes)
Manihot esculenta (0 genes)
Marchantia polymorpha (0 genes)
Medicago truncatula (0 genes)
Micromonas commoda (0 genes)
Nelumbo nucifera (0 genes)
Nicotiana tabacum (2 genes)
Olea europaea (0 genes)
Oryza sativa ssp. japonica (5 genes)
Papaver somniferum (2 genes)
Petunia axillaris (0 genes)
Phaseolus vulgaris (0 genes)
Physcomitrium patens (0 genes)
Pisum sativum (0 genes)
Populus trichocarpa (1 genes)
Prasinoderma coloniale (0 genes)
Prunus persica (2 genes)
Punica granatum (0 genes)
Quercus lobata (2 genes)
Rhododendron simsii (8 genes)
Rosa chinensis (9 genes)
Salix brachista (5 genes)
Salvia bowleyana (3 genes)
Sapria himalayana (0 genes)
Schrenkiella parvula (1 genes)
Sechium edule (1 genes)
Selaginella moellendorffii (0 genes)
Selenicereus undatus (0 genes)
Sequoiadendron giganteum (2 genes)
Simmondsia chinensis (0 genes)
Solanum lycopersicum (1 genes)
Solanum pennellii (1 genes)
Solanum tuberosum (0 genes)
Striga asiatica (0 genes)
Tarenaya hassleriana (0 genes)
Theobroma cacao (4 genes)
Trifolium pratense (0 genes)
Tripterygium wilfordii (1 genes)
Trochodendron aralioides (3 genes)
Utricularia gibba (0 genes)
Vaccinium macrocarpon (1 genes)
Vanilla planifolia (2 genes)
Vigna mungo (0 genes)
Vitis vinifera (2 genes)
Zea mays (0 genes)

Program Settings