Gene: vmacro03236

General Information

Structural Information

  • Species Vaccinium macrocarpon
  • Gene Identifier vmacro03236
  • Transcript Identifier vmacro03236-RA
  • Gene Type Coding gene
  • Location chr9_Vaccinium_macrocarpon_Stevens_v1 : 11715029-11723249 : negative

Gene Family Information

  • ID HOM05D000234
  • #Genes/#Species 1784/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id vmacro03236_Vaccinium_macrocarpon_Stevens_v1

Descriptions

  • Description Similar to AGO5: Protein argonaute 5 (Arabidopsis thaliana OX=3702)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0033169
ISO
PLAZA Integrative Orthologyhistone H3-K9 demethylation Os03g0800200
GO:0031047
ISO
PLAZA Integrative Orthologygene silencing by RNA Solyc06g074730.4
GO:0055046
ISO
PLAZA Integrative Orthologymicrogametogenesis Os03g0800200
GO:2000616
ISO
PLAZA Integrative Orthologynegative regulation of histone H3-K9 acetylation Os03g0800200
GO:0009616
ISO
PLAZA Integrative OrthologyRNAi-mediated antiviral immune response AT2G27880
GO:0098542
ISO
PLAZA Integrative Orthologydefense response to other organism AT2G27880
GO:0061866
ISO
PLAZA Integrative Orthologynegative regulation of histone H3-S10 phosphorylation Os03g0800200
GO:0009615
ISO
PLAZA Integrative Orthologyresponse to virus AT2G27880
GO:1903343
ISO
PLAZA Integrative Orthologypositive regulation of meiotic DNA double-strand break formation Os03g0800200
GO:1900111
ISO
PLAZA Integrative Orthologypositive regulation of histone H3-K9 dimethylation Os03g0800200
GO:0007140
ISO
PLAZA Integrative Orthologymale meiotic nuclear division Os03g0800200
GO:0009561
ISO
PLAZA Integrative Orthologymegagametogenesis Os03g0800200
GO:0007143
ISO
PLAZA Integrative Orthologyfemale meiotic nuclear division Os03g0800200

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT2G27880
GO:0005515
IEA
InterProprotein binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005731
ISO
PLAZA Integrative Orthologynucleolus organizer region Os03g0800200
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT2G27880
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus Os03g0800200

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR032474 Protein argonaute, N-terminal
IPR032472 Argonaute linker 2 domain
IPR036085 PAZ domain superfamily
IPR014811 Argonaute, linker 1 domain
IPR012337 Ribonuclease H-like superfamily
IPR003100 PAZ domain
IPR036397 Ribonuclease H superfamily
IPR003165 Piwi domain
Mapman id Description
35.1 not assigned.annotated