Gene: Sopen12g026020
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen12g026020
- Transcript Identifier Sopen12g026020.1
- Gene Type Coding gene
- Location Spenn-ch12 : 67470942-67482343 : negative
Gene Family Information
- ID HOM05D000004
- #Genes/#Species 19584/91
- Phylogenetic origin
- ID ORTHO05D000002
- #Genes/#Species 15655/89
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen12g026020.1
Descriptions
- Description Retrovirus-related Pol polyprotein from transposon TNT 1-94 | Reverse transcriptase (EC 2.7.7.49) | Endonuclease) - Nicotiana tabacum (Common tobacco), unknown protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0015074 | IEA | InterPro | DNA integration |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001584 | Integrase, catalytic core |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR036875 | Zinc finger, CCHC-type superfamily |
| IPR043502 | DNA/RNA polymerase superfamily |
| IPR000477 | Reverse transcriptase domain |
| IPR001878 | Zinc finger, CCHC-type |
| IPR036397 | Ribonuclease H superfamily |
| IPR025724 | GAG-pre-integrase domain |
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain |
| IPR021109 | Aspartic peptidase domain superfamily |
| IPR005162 | Retrotransposon gag domain |
| IPR041577 | Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |