Gene: Sopen12g015990
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen12g015990
- Transcript Identifier Sopen12g015990.1
- Gene Type Coding gene
- Location Spenn-ch12 : 38793941-38815367 : positive
Gene Family Information
- ID HOM05D000004
- #Genes/#Species 19584/91
- Phylogenetic origin
- ID ORTHO05D000002
- #Genes/#Species 15655/89
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen12g015990.1
Descriptions
- Description RNA-directed DNA polymerase homolog (Reverse transcriptase homolog) - Oenothera bertiana (Berteros evening primrose), TCP family protein involved in heterchronic regulation of leaf differentiation. | TCP domain protein 10 (TCP10) | CONTAINS InterPro DOMAIN/s: Transcription factor, TCP , Transcription factor TCP subgroup | BEST Arabidopsis thaliana protein match is: TCP family transcription factor 4
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR041588 | Integrase zinc-binding domain |
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain |
| IPR000477 | Reverse transcriptase domain |
| IPR036875 | Zinc finger, CCHC-type superfamily |
| IPR001878 | Zinc finger, CCHC-type |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR005162 | Retrotransposon gag domain |
| IPR005333 | Transcription factor, TCP |
| IPR016197 | Chromo-like domain superfamily |
| IPR017887 | Transcription factor TCP subgroup |
| IPR043502 | DNA/RNA polymerase superfamily |
| IPR036397 | Ribonuclease H superfamily |
| IPR021109 | Aspartic peptidase domain superfamily |
| IPR041373 | Reverse transcriptase, RNase H-like domain |
| Mapman id | Description |
|---|---|
| 15.5.19 | RNA biosynthesis.transcriptional regulation.transcription factor (TCP) |