Gene: Sopen11g030880
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen11g030880
- Transcript Identifier Sopen11g030880.1
- Gene Type Coding gene
- Location Spenn-ch11 : 66186724-66187258 : negative
Gene Family Information
- ID HOM05D000221
- #Genes/#Species 1858/100
- Phylogenetic origin
- ID ORTHO05D000245
- #Genes/#Species 1286/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid Sopen11g030880.1
Descriptions
- Description Probable histone H2A.3 - Medicago truncatula (Barrel medic), Encodes HTA12, a histone H2A protein. | histone H2A 12 (HTA12) | FUNCTIONS IN: DNA binding | INVOLVED IN: nucleosome assembly | LOCATED IN: nucleus, nucleosome | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Histone H2A , Histone-fold , Histone core | BEST Arabidopsis thaliana protein match is: histone H2A 6 ., Histone-fold
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0070828 | ISO | PLAZA Integrative Orthology | heterochromatin organization | AT5G02560 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0046982 | IEA | InterPro | protein heterodimerization activity | |
| GO:0003682 | ISO | PLAZA Integrative Orthology | chromatin binding | AT5G02560 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000786 | IEA | InterPro | nucleosome | |
| GO:0000792 | ISO | PLAZA Integrative Orthology | heterochromatin | AT5G02560 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT5G59870 |
| GO:0000775 | ISO | PLAZA Integrative Orthology | chromosome, centromeric region | AT5G02560 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT5G59870 |
| GO:0005721 | ISO | PLAZA Integrative Orthology | pericentric heterochromatin | AT5G59870 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.1.1.1 | Chromatin organisation.chromatin structure.DNA wrapping.histone (H2A) |