Gene: AT5G59870

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G59870
  • Transcript Identifier AT5G59870.1
  • Gene Type Coding gene
  • Location Chr5 : 24115605-24116144 : negative

Gene Family Information

  • ID HOM05D000221
  • #Genes/#Species 1858/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G59870.1
  • symbol HTA6
  • Alias h2a.w.6
  • uniprot Q9FJE8

Descriptions

  • Description histone H2A 6
  • Computational description histone H2A 6 (HTA6); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleolus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 12 (TAIR:AT5G02560.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006342
IBA
Gene Ontologychromatin silencing1
GO:0070828
IGI
Gene Ontologyheterochromatin organization2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046982
IEA
Gene Ontologyprotein heterodimerization activity
GO:0046982
IEA
InterProprotein heterodimerization activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IBA
Gene OntologyDNA binding1
GO:0003677
IEA
InterProDNA binding
GO:0003682
IDA
Gene Ontologychromatin binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000786
IEA
GOA Databasenucleosome
GO:0000786
IEA
InterPronucleosome
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma3
GO:0005730
IDA
GOA Databasenucleolus
GO:0005730
HDA
Gene Ontologynucleolus4
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005694
IEA
GOA Databasechromosome
GO:0009536
HDA
Gene Ontologyplastid5
GO:0005721
IDA
Gene Ontologypericentric heterochromatin2
GO:0000792
IDA
Gene Ontologyheterochromatin2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002119 Histone H2A
IPR032454 Histone H2A, C-terminal domain
IPR009072 Histone-fold
IPR007125 Histone H2A/H2B/H3
Mapman id Description
12.1.1.1 Chromatin organisation.chromatin structure.DNA wrapping.histone (H2A)