Gene: AT5G02560
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G02560
- Transcript Identifier AT5G02560.1
- Gene Type Coding gene
- Location Chr5 : 575437-576456 : positive
Gene Family Information
- ID HOM05D000221
- #Genes/#Species 1858/100
- Phylogenetic origin
- ID ORTHO05D000245
- #Genes/#Species 1286/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT5G02560.1
- symbol HTA12
- Alias h2a.w.12
- uniprot F4KCF4
Descriptions
- Description histone H2A 12
- Computational description histone H2A 12 (HTA12); FUNCTIONS IN: DNA binding; INVOLVED IN: nucleosome assembly; LOCATED IN: nucleus, nucleosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone H2A (InterPro:IPR002119), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: histone H2A 6 (TAIR:AT5G59870.1); Has 3926 Blast hits to 3921 proteins in 369 species: Archae - 0; Bacteria - 0; Metazoa - 2576; Fungi - 297; Plants - 619; Viruses - 2; Other Eukaryotes - 432 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0070828 | IGI | Gene Ontology | heterochromatin organization | 1 |
| GO:0006342 | IBA | Gene Ontology | chromatin silencing | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046982 | IEA | Gene Ontology | protein heterodimerization activity | |
| GO:0046982 | IEA | InterPro | protein heterodimerization activity | |
| GO:0003682 | IDA | Gene Ontology | chromatin binding | 1 |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IBA | Gene Ontology | DNA binding | 2 |
| GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0000775 | IDA | Gene Ontology | chromosome, centromeric region | 1 |
| GO:0000792 | IDA | Gene Ontology | heterochromatin | 1 |
| GO:0000786 | IEA | GOA Database | nucleosome | |
| GO:0000786 | IEA | InterPro | nucleosome | |
| GO:0005694 | IEA | GOA Database | chromosome |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.1.1.1 | Chromatin organisation.chromatin structure.DNA wrapping.histone (H2A) |