Gene: Sopen11g030600
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen11g030600
- Transcript Identifier Sopen11g030600.1
- Gene Type Coding gene
- Location Spenn-ch11 : 65967656-65974531 : positive
Gene Family Information
- ID HOM05D002621
- #Genes/#Species 261/99
- Phylogenetic origin
- ID ORTHO05D002929
- #Genes/#Species 254/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen11g030600.1
Descriptions
- Description NOT2 / NOT3 / NOT5 family | FUNCTIONS IN: transcription regulator activity | INVOLVED IN: regulation of transcription | LOCATED IN: nucleus, chloroplast | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 | BEST Arabidopsis thaliana protein match is: VIRE2 interacting protein 2
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0015074 | ISO | PLAZA Integrative Orthology | DNA integration | AT5G59710 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G07705 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G59710 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0030015 | IEA | InterPro | CCR4-NOT core complex | |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G59710 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.4.2.1.2.4 | RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.component NOT2 |