Gene: AT1G07705

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G07705
  • Transcript Identifier AT1G07705.2
  • Gene Type Coding gene
  • Location Chr1 : 2382090-2385856 : positive

Gene Family Information

  • ID HOM05D002621
  • #Genes/#Species 261/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G07705.2
  • Alias NOT2a,Negative on TATA less2a
  • uniprot A8MR45

Descriptions

  • Description NOT2 / NOT3 / NOT5 family
  • Computational description NOT2 / NOT3 / NOT5 family; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282); BEST Arabidopsis thaliana protein match is: VIRE2 interacting protein 2 (TAIR:AT5G59710.1); Has 2858 Blast hits to 2245 proteins in 417 species: Archae - 0; Bacteria - 989; Metazoa - 670; Fungi - 343; Plants - 147; Viruses - 8; Other Eukaryotes - 701 (source: NCBI BLink).
  • Computational description NOT2 / NOT3 / NOT5 family; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282); BEST Arabidopsis thaliana protein match is: VIRE2 interacting protein 2 (TAIR:AT5G59710.1); Has 3259 Blast hits to 2610 proteins in 429 species: Archae - 0; Bacteria - 983; Metazoa - 821; Fungi - 441; Plants - 185; Viruses - 8; Other Eukaryotes - 821 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
Gene Ontologyregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0000289
IBA
Gene Ontologynuclear-transcribed mRNA poly(A) tail shortening1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus
GO:0009507
ISM
Gene Ontologychloroplast
GO:0030015
IBA
IEA
Gene OntologyCCR4-NOT core complex1
GO:0030015
IEA
InterProCCR4-NOT core complex
GO:0000932
IBA
Gene OntologyP-body1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR040168 Not2/Not3/Not5
IPR007282 NOT2/NOT3/NOT5, C-terminal
IPR038635 CCR4-NOT complex subunit 2/3/5, N-terminal domain superfamily
Mapman id Description
16.4.2.1.2.4 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.component NOT2