Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sopen06g031990 NOT2 / NOT3 / NOT5 family | FUNCTIONS IN: transcription regulator activity | INVOLVED IN: regulation of transcription | LOCATED IN: nucleus, chloroplast | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 | BEST Arabidopsis thaliana protein match is: VIRE2 interacting protein 2 Spenn-ch06 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31sc23G240 sc-23 - View
Acer truncatum Atru.chr3.3794 chr3 + View
Actinidia chinensis Actinidia37262 Lachesis_group24 - View
Actinidia chinensis Actinidia07080 Lachesis_group13 - View
Actinidia chinensis Actinidia03771 Lachesis_group9 + View
Arabidopsis lyrata AL8G36230 scaffold_8 + View
Arabidopsis lyrata AL1G17910 scaffold_1 + View
Avicennia marina MSTRG.18609 ScioBoG_22153_HRSCAF_22259 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.B07III K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) arahy.Tifrunner.gnm1.Arahy.03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.K398AB K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) arahy.Tifrunner.gnm1.Arahy.13 + View
Arabidopsis thaliana AT1G07705 NOT2 / NOT3 / NOT5 family NOT2 / NOT3 / NOT5 family%3B FUNCTIONS IN: transcription regulator activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%2C chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282)%3B BEST Arabidopsis thaliana protein match is: VIRE2 interacting protein 2 (TAIR:AT5G59710.1)%3B Has 2858 Blast hits to 2245 proteins in 417 species: Archae - 0%3B Bacteria - 989%3B Metazoa - 670%3B Fungi - 343%3B Plants - 147%3B Viruses - 8%3B Other Eukaryotes - 701 (source: NCBI BLink). NOT2 / NOT3 / NOT5 family%3B FUNCTIONS IN: transcription regulator activity%3B INVOLVED IN: regulation of transcription%3B LOCATED IN: nucleus%2C chloroplast%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: NOT2/NOT3/NOT5 (InterPro:IPR007282)%3B BEST Arabidopsis thaliana protein match is: VIRE2 interacting protein 2 (TAIR:AT5G59710.1)%3B Has 3259 Blast hits to 2610 proteins in 429 species: Archae - 0%3B Bacteria - 983%3B Metazoa - 821%3B Fungi - 441%3B Plants - 185%3B Viruses - 8%3B Other Eukaryotes - 821 (source: NCBI BLink). Chr1 + View
Brassica carinata BcaB02g06718 ChrB02 - View
Brassica carinata BcaC04g19619 ChrC04 + View
Brassica carinata BcaB03g13366 ChrB03 + View
Brassica napus A03p11540 A03 - View
Brassica napus A06p04940 A06 - View
Brassica napus C03p13350 C03 - View
Brassica oleracea BolC3t13797H C3 - View
Brassica oleracea BolC8t47137H C8 - View
Brassica oleracea BolC9t58085H C9 + View
Brassica oleracea BolC2t07327H C2 - View
Brassica rapa BraA10t43776Z A10 + View
Brassica rapa BraA06t23699Z A06 - View
Camellia sinensis var. sinensis CSS0000678 PREDICTED: probable NOT transcription complex subunit VIP2 isoform X3 [Vitis vinifera] Chr4 - View
Capsicum annuum CAN.G755.18 PGAv.1.6.scaffold755 + View
Capsicum annuum CAN.G394.10 PGAv.1.6.scaffold394 + View
Cicer arietinum L. Ca_19213_v3 Ca_LG6_v3 - View
Cicer arietinum L. Ca_01358_v3 Ca_LG1_v3 - View
Corylus avellana Haze_24004 Similar to VIP2: Probable NOT transcription complex subunit VIP2 (Fragment) (Nicotiana benthamiana OX%3D4100) 6 + View
Coffea canephora Cc01_g12100 Probable NOT transcription complex subunit VIP2 (Fragment) chr1 + View
Citrus clementina Ciclev10027964m.g scaffold_8 + View
Carpinus fangiana Cfa011426 Cfa04 + View
Cardamine hirsuta CARHR007480 CCR4-NOT transcription complex subunit 2 Chr1 + View
Carya illinoinensis CiPaw.13G101900 K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) Chr13 - View
Carya illinoinensis CiPaw.14G074200 K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) Chr14 - View
Citrullus lanatus ClCG02G020610 CCR4-NOT transcription complex subunit, putative CG_Chr02 + View
Cucumis melo MELO3C013666.2 CCR4-NOT transcription complex subunit 2 chr11 + View
Corchorus olitorius COL.COLO4_18423 NOT2 / NOT3 / NOT5 family protein AWUE01016460.1 + View
Carica papaya Cpa.g.sc252.5 supercontig_252 + View
Capsella rubella Carub.0001s0706 K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) scaffold_1 + View
Cucumis sativus L. CsaV3_6G022060 CCR4-NOT transcription complex subunit 2 chr6 + View
Daucus carota DCAR_005297 hypothetical protein DCARv2_Chr2 + View
Davidia involucrata Dinv26286 GWHABJS00000007 + View
Davidia involucrata Dinv32863 GWHABJS00000010 - View
Durio zibethinus Duzib170G0309 NW_019167871.1 - View
Durio zibethinus Duzib168G1772 NW_019168159.1 - View
Durio zibethinus Duzib150G0177 NW_019167882.1 + View
Erigeron canadensis ECA247G4039 Conyza_canadensis_scaffold:7 - View
Erigeron canadensis ECA236G0810 Conyza_canadensis_scaffold:3 - View
Eucalyptus grandis Eucgr.J02100 Chr10 - View
Erythranthe guttata Migut.D02149 scaffold_4 - View
Eutrema salsugineum Thhalv10007092m.g scaffold_5 + View
Fragaria x ananassa FAN25G3681 K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) Fvb3-1 - View
Fragaria x ananassa FAN21G0358 K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) Fvb3-2 + View
Fragaria x ananassa FAN16G3650 K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) Fvb3-3 + View
Fragaria x ananassa FAN11G3854 K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) Fvb3-4 + View
Fragaria vesca FvH4_3g34620 K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) Fvb3 + View
Gossypium hirsutum Gohir.D05G098901 PTHR23326:SF3 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 2 D05 - View
Gossypium hirsutum Gohir.A08G000137 K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) A08 + View
Gossypium hirsutum Gohir.A05G098900 PTHR23326:SF3 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 2 A05 - View
Gossypium hirsutum Gohir.D08G010100 PTHR23326:SF3 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 2 D08 + View
Glycine max Glyma.15G042700 K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) Gm15 - View
Glycine max Glyma.12G074700 K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) Gm12 + View
Glycine max Glyma.11G145854 K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) Gm11 - View
Glycine max Glyma.13G331400 K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) Gm13 + View
Gossypium raimondii Gorai.009G102700 Chr09 - View
Gossypium raimondii Gorai.004G003300 Chr04 + View
Hydrangea macrophylla Hma1.2p1_0746F.1_g212350 Hma1.2p1_0746F.1 + View
Hydrangea macrophylla Hma1.2p1_0035F.1_g021830 Hma1.2p1_0035F.1 + View
Lupinus albus Lalb_Chr14g0374941 K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) Lalb_Chr14 + View
Lotus japonicus Lj3g0019780 K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) chr3 - View
Lotus japonicus Lj3g0000216 K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) chr3 - View
Lonicera japonica Lj2C1048T3 GWHAAZE00000002 + View
Lactuca sativa Lsat_1_v5_gn_9_21580 Lsat_1_v8_lg_9 + View
Malus domestica MD11G1117100 NOT2 / NOT3 / NOT5 family Chr11 - View
Malus domestica MD03G1103300 NOT2 / NOT3 / NOT5 family Chr03 - View
Manihot esculenta Manes.04G029100 Chromosome04 + View
Manihot esculenta Manes.11G136600 Chromosome11 - View
Medicago truncatula Medtr2g096180 CCR4-NOT transcription complex subunit 2 chr2 + View
Medicago truncatula Medtr4g061843 CCR4-NOT transcription complex subunit 2 chr4 + View
Nelumbo nucifera Nn2g12836 chr2 + View
Nelumbo nucifera Nn2g10543 chr2 - View
Nicotiana tabacum Nitab4.5_0002684g0140 NOT2/NOT3/NOT5 Nitab4.5_0002684 + View
Nicotiana tabacum Nitab4.5_0007030g0020 NOT2/NOT3/NOT5 Nitab4.5_0007030 + View
Nicotiana tabacum Nitab4.5_0000270g0280 NOT2/NOT3/NOT5 Nitab4.5_0000270 + View
Petunia axillaris Peaxi162Scf00411g00719 CCR4-NOT transcription complex subunit 2 Peaxi162Scf00411 - View
Punica granatum PGR119G1579 NC_045132.1 + View
Punica granatum PGR102G1233 NC_045129.1 + View
Prunus persica Prupe.6G087300 K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) Pp06 - View
Pisum sativum Psat7g220840 NOT2 / NOT3 / NOT5 family chr7LG7 - View
Pisum sativum Psat5g282320 NOT2 / NOT3 / NOT5 family chr5LG3 + View
Papaver somniferum PSO384G1352 NC_039368.1 - View
Papaver somniferum PSO339G0540 NC_039366.1 - View
Phaseolus vulgaris Phvul.011G069400 Chr11 - View
Phaseolus vulgaris Phvul.L003389 scaffold_30 - View
Quercus lobata QL01p034369 1 - View
Rosa chinensis RcHm_v2.0_Chr5g0062331 RcHm_v2.0_Chr5 + View
Rhododendron simsii Rhsim13G0088600 chr13 - View
Striga asiatica SGA_v2.0_scaffold61G21236 scaffold61 + View
Salvia bowleyana SalBow3G3367 GWHASIU00000006 - View
Sechium edule Sed0008508 LG01 + View
Sechium edule Sed0007799 LG05 + View
Solanum lycopersicum Solyc11g072940.2 NOT2/NOT3/NOT5-like protein (AHRD V3.3 *** A0A2U1KP40_ARTAN) SL4.0ch11 + View
Solanum lycopersicum Solyc06g075590.4 NOT2/NOT3/NOT5-like protein (AHRD V3.3 *** A0A2U1KP40_ARTAN) SL4.0ch06 + View
Schrenkiella parvula Sp1g06500 K12605 - CCR4-NOT transcription complex subunit 2 (CNOT2, NOT2) ch1-1 - View
Solanum tuberosum PGSC0003DMG402015527 VIP2 ST4.03ch11 + View
Solanum tuberosum PGSC0003DMG400030306 CCR4-NOT transcription complex subunit ST4.03ch06 + View
Trochodendron aralioides TAR369G0172 group18 - View
Theobroma cacao Thecc.09G330500 NOT2 / NOT3 / NOT5 family Chromosome_9 - View
Tarenaya hassleriana THA.LOC104800634 probable NOT transcription complex subunit VIP2 NW_010969548.1 + View
Tarenaya hassleriana THA.LOC104810794 probable NOT transcription complex subunit VIP2 NW_010965304.1 + View
Trifolium pratense TPR.G2973 Tp57577_TGAC_v2_LG4 + View
Trifolium pratense TPR.G11503 Tp57577_TGAC_v2_LG7 + View
Tripterygium wilfordii TWI75G1204 NC_052253.1 - View
Vigna mungo VMungo1080G1722 CM024079.1 + View
Vigna mungo VMungo1127G1223 CM024076.1 - View
Vitis vinifera GSVIVG01025059001 chr6 + View