Gene: Sopen11g030400
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen11g030400
- Transcript Identifier Sopen11g030400.1
- Gene Type Coding gene
- Location Spenn-ch11 : 65805716-65835830 : negative
Gene Family Information
- ID HOM05D000228
- #Genes/#Species 1809/100
- Phylogenetic origin
- ID ORTHO05D001545
- #Genes/#Species 391/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen11g030400.1
Descriptions
- Description Encodes a subunit of RNA polymerase III (aka RNA polymerase C). | nuclear RNA polymerase C1 (NRPC1) | FUNCTIONS IN: DNA-directed RNA polymerase activity, ribonucleoside binding, DNA binding, zinc ion binding | INVOLVED IN: transcription | LOCATED IN: nucleus | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal , RNA polymerase, alpha subunit , RNA polymerase Rpb1, domain 3 , RNA polymerase Rpb1, domain 5 , RNA polymerase Rpb1, domain 1 , DNA-directed RNA polymerase III largest subunit , RNA polymerase Rpb1, domain 4 | BEST Arabidopsis thaliana protein match is: RNA polymerase II large subunit ., RNA polymerase Rpb1, domain 5, DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP) (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) - Mesostigma viride
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | InterPro | transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR007066 | RNA polymerase Rpb1, domain 3 |
| IPR007081 | RNA polymerase Rpb1, domain 5 |
| IPR007080 | RNA polymerase Rpb1, domain 1 |
| IPR006592 | RNA polymerase, N-terminal |
| IPR007083 | RNA polymerase Rpb1, domain 4 |
| IPR038120 | RNA polymerase Rpb1, funnel domain superfamily |
| IPR000722 | RNA polymerase, alpha subunit |
| IPR042102 | RNA polymerase Rpb1, domain 3 superfamily |
| IPR035698 | DNA-directed RNA polymerase III subunit RPC1, C-terminal |
| IPR035697 | DNA-directed RNA polymerase III subunit RPC1, N-terminal |
| IPR044893 | RNA polymerase Rpb1, clamp domain superfamily |
| Mapman id | Description |
|---|---|
| 15.1.3.1 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic components.subunit 1 |