Gene: Sopen11g021420
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen11g021420
- Transcript Identifier Sopen11g021420.1
- Gene Type Coding gene
- Location Spenn-ch11 : 49547968-49560356 : negative
Gene Family Information
- ID HOM05D000004
- #Genes/#Species 19584/91
- Phylogenetic origin
- ID ORTHO05D000002
- #Genes/#Species 15655/89
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen11g021420.1
Descriptions
- Description RNA-directed DNA polymerase homolog (Reverse transcriptase homolog) - Oenothera bertiana (Berteros evening primrose), NB-ARC domain-containing disease resistance protein | FUNCTIONS IN: protein binding | INVOLVED IN: apoptosis, defense response | LOCATED IN: endomembrane system | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein , NB-ARC , Leucine-rich repeat , Disease resistance protein | BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding | |
| GO:0043531 | IEA | InterPro | ADP binding |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036875 | Zinc finger, CCHC-type superfamily |
| IPR021109 | Aspartic peptidase domain superfamily |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR041588 | Integrase zinc-binding domain |
| IPR000477 | Reverse transcriptase domain |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR002182 | NB-ARC |
| IPR042197 | Apoptotic protease-activating factors, helical domain |
| IPR001878 | Zinc finger, CCHC-type |
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain |
| IPR041373 | Reverse transcriptase, RNase H-like domain |
| IPR036397 | Ribonuclease H superfamily |
| IPR005162 | Retrotransposon gag domain |
| IPR043502 | DNA/RNA polymerase superfamily |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |