Gene: Sopen11g012490
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen11g012490
- Transcript Identifier Sopen11g012490.1
- Gene Type Coding gene
- Location Spenn-ch11 : 17692445-17714831 : negative
Gene Family Information
- ID HOM05D000014
- #Genes/#Species 7439/72
- Phylogenetic origin
- ID ORTHO05D000016
- #Genes/#Species 4583/65
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen11g012490.1
Descriptions
- Description a MADS box transcription factor expressed in the carpel and ovules | SEEDSTICK (STK) | FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription, DNA-dependent, ovule development, carpel development | LOCATED IN: nucleus | EXPRESSED IN: 11 plant structures | EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage | CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box , Transcription factor, K-box | BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein ., Floral homeotic protein AGAMOUS (pMADS3) - Petunia hybrida (Petunia)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated | |
| GO:0045944 | IEA | InterPro | positive regulation of transcription by RNA polymerase II |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0046983 | IEA | InterPro | protein dimerization activity | |
| GO:0000977 | IEA | InterPro | RNA polymerase II transcription regulatory region sequence-specific DNA binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR002487 | Transcription factor, K-box |
| IPR041373 | Reverse transcriptase, RNase H-like domain |
| IPR043502 | DNA/RNA polymerase superfamily |
| IPR036879 | Transcription factor, MADS-box superfamily |
| IPR002100 | Transcription factor, MADS-box |
| IPR033896 | MADS MEF2-like |
| IPR041588 | Integrase zinc-binding domain |
| IPR021109 | Aspartic peptidase domain superfamily |
| IPR036397 | Ribonuclease H superfamily |
| Mapman id | Description |
|---|---|
| 15.5.14 | RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL) |