Gene: Sopen10g030910
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen10g030910
- Transcript Identifier Sopen10g030910.1
- Gene Type Coding gene
- Location Spenn-ch10 : 78482169-78507387 : positive
Gene Family Information
- ID HOM05D000228
- #Genes/#Species 1809/100
- Phylogenetic origin
- ID ORTHO05D005112
- #Genes/#Species 164/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen10g030910.1
Descriptions
- Description Encodes a subunit of RNA polymerase I (aka RNA polymerase A). | nuclear RNA polymerase A1 (NRPA1) | FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding | INVOLVED IN: transcription | LOCATED IN: nucleus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal , RNA polymerase, alpha subunit , RNA polymerase Rpb1, domain 3 , RNA polymerase Rpb1, domain 1 , RNA polymerase Rpb1, domain 5 , DNA-directed RNA pol I, largest subunit , RNA polymerase Rpb1, domain 4 | BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0006351 | IEA | InterPro | transcription, DNA-templated |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003677 | IEA | InterPro | DNA binding | |
GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
GO:0008270 | IEA | InterPro | zinc ion binding |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT3G57660 |
GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT3G57660 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR000722 | RNA polymerase, alpha subunit |
IPR044893 | RNA polymerase Rpb1, clamp domain superfamily |
IPR042102 | RNA polymerase Rpb1, domain 3 superfamily |
IPR038120 | RNA polymerase Rpb1, funnel domain superfamily |
IPR006592 | RNA polymerase, N-terminal |
IPR007083 | RNA polymerase Rpb1, domain 4 |
IPR007081 | RNA polymerase Rpb1, domain 5 |
IPR007080 | RNA polymerase Rpb1, domain 1 |
IPR007066 | RNA polymerase Rpb1, domain 3 |
IPR015699 | DNA-directed RNA pol I, largest subunit |
Mapman id | Description |
---|---|
15.1.1.1 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic components.subunit 1 |