Gene: Sopen10g030910

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g030910
  • Transcript Identifier Sopen10g030910.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 78482169-78507387 : positive

Gene Family Information

  • ID HOM05D000228
  • #Genes/#Species 1809/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g030910.1

Descriptions

  • Description Encodes a subunit of RNA polymerase I (aka RNA polymerase A). | nuclear RNA polymerase A1 (NRPA1) | FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding, zinc ion binding | INVOLVED IN: transcription | LOCATED IN: nucleus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA polymerase, N-terminal , RNA polymerase, alpha subunit , RNA polymerase Rpb1, domain 3 , RNA polymerase Rpb1, domain 1 , RNA polymerase Rpb1, domain 5 , DNA-directed RNA pol I, largest subunit , RNA polymerase Rpb1, domain 4 | BEST Arabidopsis thaliana protein match is: nuclear RNA polymerase C1
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006351
IEA
InterProtranscription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003899
IEA
InterProDNA-directed 5'-3' RNA polymerase activity
GO:0008270
IEA
InterProzinc ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G57660
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT3G57660

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000722 RNA polymerase, alpha subunit
IPR044893 RNA polymerase Rpb1, clamp domain superfamily
IPR042102 RNA polymerase Rpb1, domain 3 superfamily
IPR038120 RNA polymerase Rpb1, funnel domain superfamily
IPR006592 RNA polymerase, N-terminal
IPR007083 RNA polymerase Rpb1, domain 4
IPR007081 RNA polymerase Rpb1, domain 5
IPR007080 RNA polymerase Rpb1, domain 1
IPR007066 RNA polymerase Rpb1, domain 3
IPR015699 DNA-directed RNA pol I, largest subunit
Mapman id Description
15.1.1.1 RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol I catalytic components.subunit 1