Gene: Sopen10g009110
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen10g009110
- Transcript Identifier Sopen10g009110.1
- Gene Type Coding gene
- Location Spenn-ch10 : 14045661-14058737 : positive
Gene Family Information
- ID HOM05D000004
- #Genes/#Species 19584/91
- Phylogenetic origin
- ID ORTHO05D000002
- #Genes/#Species 15655/89
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen10g009110.1
Descriptions
- Description encodes for CP47, subunit of the photosystem II reaction center. | photosystem II reaction center protein B (PSBB) | FUNCTIONS IN: chlorophyll binding | INVOLVED IN: photosynthesis, light reaction, photosystem II assembly | LOCATED IN: in 6 components | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Photosystem antenna protein-like , Photosystem II, PsbB | BEST Arabidopsis thaliana protein match is: photosystem II reaction center protein C ., Photosystem II P680 chlorophyll A apoprotein (CP-47 protein) - Nicotiana tabacum (Common tobacco)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009767 | IEA | InterPro | photosynthetic electron transport chain | |
| GO:0019684 | IEA | InterPro | photosynthesis, light reaction |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0016168 | IEA | InterPro | chlorophyll binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009521 | IEA | InterPro | photosystem | |
| GO:0016020 | IEA | InterPro | membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036397 | Ribonuclease H superfamily |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR043502 | DNA/RNA polymerase superfamily |
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain |
| IPR000932 | Photosystem antenna protein-like |
| IPR005162 | Retrotransposon gag domain |
| IPR036001 | Photosystem antenna protein-like superfamily |
| IPR041373 | Reverse transcriptase, RNase H-like domain |
| IPR041588 | Integrase zinc-binding domain |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |