Gene: Sopen08g023030

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen08g023030
  • Transcript Identifier Sopen08g023030.1
  • Gene Type Coding gene
  • Location Spenn-ch08 : 62684913-62697978 : negative

Gene Family Information

  • ID HOM05D002037
  • #Genes/#Species 325/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen08g023030.1

Descriptions

  • Description Encodes a DCAF/DWD protein capable of interacting with DDB1 and associating with CUL4, likely as part of a nuclear ubiquitin ligase complex. DCAF1 appears to be required for plant embryogenesis and to affect several other developmental processes including leaf, shoot, and flower development. | DDB1-CUL4 associated factor 1 (DCAF1) | FUNCTIONS IN: nucleotide binding | INVOLVED IN: in 6 processes | LOCATED IN: nucleus, CUL4 RING ubiquitin ligase complex | EXPRESSED IN: 29 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain , LisH dimerisation motif, subgroup , WD40-repeat-containing domain , WD40 repeat , WD40/YVTN repeat-like-containing domain , LisH dimerisation motif
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016567
IEA
InterProprotein ubiquitination
GO:0010154
ISO
PLAZA Integrative Orthologyfruit development AT4G31160
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT4G31160
GO:0009908
ISO
PLAZA Integrative Orthologyflower development AT4G31160
GO:0048367
ISO
PLAZA Integrative Orthologyshoot system development AT4G31160
GO:0048366
ISO
PLAZA Integrative Orthologyleaf development AT4G31160
GO:0048827
ISO
PLAZA Integrative Orthologyphyllome development AT4G31160

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G31160
GO:0080008
ISO
PLAZA Integrative OrthologyCul4-RING E3 ubiquitin ligase complex AT4G31160

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001680 WD40 repeat
IPR036322 WD40-repeat-containing domain superfamily
IPR015943 WD40/YVTN repeat-like-containing domain superfamily
IPR033270 VPRBP/DCAF1 family
IPR006594 LIS1 homology motif
Mapman id Description
35.1 not assigned.annotated