Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 3526.9 1901 100.0
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 3498.4 1888 99.7
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 3257.6 1899 92.3
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2857.4 1782 84.7
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2469.9 1927 71.4
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2434.1 1847 71.1
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2384.8 1937 68.6
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2376.7 1921 70.1
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2363.2 1923 68.4
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2355.9 1918 69.6
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2332.0 1925 67.3
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2300.4 1880 68.7
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2294.6 1913 68.2
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2293.8 1934 67.2
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2291.2 1918 68.0
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2289.2 1810 68.5
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 2289.2 1926 66.8
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2285.4 1951 67.0
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2280.0 1913 68.2
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2277.3 1877 67.1
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2272.7 1933 66.6
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2265.3 1898 67.1
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2264.6 1814 68.5
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2264.2 1911 66.8
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2263.0 1910 66.8
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2261.9 1910 66.8
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2261.1 1843 67.1
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2258.8 1921 66.5
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2256.5 1830 67.5
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2254.2 1911 67.2
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2253.0 1925 67.2
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2252.6 1810 67.6
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2252.6 1915 67.0
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2239.5 1920 65.7
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 2235.3 1909 66.5
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2223.7 1890 67.3
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2219.9 1953 64.6
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2218.4 2020 62.9
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2216.8 1833 67.3
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2214.1 1853 65.6
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2213.3 1916 65.8
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2206.4 1920 66.1
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2205.6 1882 65.6
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2204.1 1933 65.2
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2202.9 1936 64.5
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2202.9 1920 65.0
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2198.7 1913 65.6
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2197.2 1844 66.1
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2195.6 1873 66.6
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2190.2 1895 66.2
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 2189.1 1909 66.0
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2187.5 1919 64.4
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2177.5 1919 65.7
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2173.3 1913 64.8
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2173.3 1910 65.2
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2171.7 1890 64.0
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2167.1 1920 64.3
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2163.7 1919 64.9
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2161.0 1925 64.6
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2155.6 1921 64.8
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2153.6 1921 64.8
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2149.8 1829 63.5
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2145.5 1907 65.0
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2137.5 1916 64.6
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2136.3 1836 65.1
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2132.1 1916 64.2
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2130.5 1826 64.5
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2122.1 1928 63.7
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2105.1 1928 63.0
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2103.2 1921 63.2
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2102.4 1793 64.1
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2102.4 1919 63.5
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 2089.3 1912 63.7
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2080.1 1755 68.3
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2076.2 1829 62.3
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2063.9 1948 61.5
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2053.1 1833 63.2
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2015.0 1923 61.9
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 2010.3 1950 61.0
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 2001.5 1885 60.4
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 1992.2 1884 60.1
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 1981.8 1695 64.7
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1929.1 1915 59.5
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1915.6 1934 57.7
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 1908.3 1877 58.7
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1907.5 1736 62.2
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1878.2 1881 57.6
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1871.3 1891 57.4
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1850.1 1907 56.1
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1820.1 1880 56.3
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1801.2 1945 57.1
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1793.5 1888 55.1
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1793.5 1884 55.3
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1792.7 1872 56.0
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1786.9 1884 55.0
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1786.5 1889 55.1
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1778.5 1876 55.9
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1773.1 1884 55.3
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1765.7 1877 55.8
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1765.7 1896 55.3
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1765.0 1879 54.9
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1764.2 1896 54.7
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1763.0 1895 54.9
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1763.0 1895 54.9
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1760.7 1892 55.6
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1731.5 1073 89.4
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1659.8 1838 53.0
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1625.5 1236 72.9
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1603.2 1840 51.1
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1570.4 1843 51.2
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1550.0 1245 68.2
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1516.1 1243 68.9
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1493.0 1493 58.7
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1482.2 1939 50.1
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1474.1 1953 47.3
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1468.8 1900 48.0
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1468.8 1900 48.0
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1454.1 1884 48.1
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1405.2 1443 58.4
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1329.7 821 88.6
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1249.2 1505 52.7
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1214.9 921 70.4
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1214.1 1789 44.0
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1206.4 1018 68.8
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1147.5 1336 53.8
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 0.0e+00 1095.9 1437 50.2
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 2.8e-307 1059.7 869 68.7
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 1.3e-283 981.1 1631 42.0
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.2e-262 911.4 1842 36.6
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 2.3e-253 880.6 835 59.5
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 9.4e-247 858.6 821 59.8
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.3e-215 753.8 577 73.3
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 4.9e-187 660.2 644 56.1
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 1.6e-185 655.2 656 56.4
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 8.7e-184 649.4 721 53.1
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 3.4e-180 637.5 497 68.2
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 9.9e-164 582.8 618 54.7
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.9e-163 581.3 421 77.4
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.8e-152 545.4 507 65.3
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.7e-147 528.9 507 64.3
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 2.8e-110 405.2 1244 28.3
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 2.4e-109 402.1 465 51.2
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 1.3e-107 396.4 355 61.4
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 7.3e-82 310.8 449 44.1
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 1.2e-81 310.1 2069 23.2
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 2.1e-81 309.3 655 35.9
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.9e-78 298.9 886 33.1
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.9e-77 296.2 462 40.7
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 4.1e-77 295.0 423 40.9
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 6.8e-72 277.7 235 68.5
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 4.8e-65 255.0 209 69.9
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 8.1e-65 254.2 161 79.5
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 7.9e-52 211.1 266 48.1
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 4.2e-45 188.7 227 54.6
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 1.3e-38 167.2 158 77.8
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 2.5e-29 136.3 193 48.7
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 1.1e-24 120.9 83 74.7
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 1.4e-19 104.0 52 92.3
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 1.4e-16 94.0 156 41.0
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 3.8e-14 85.9 88 52.3
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 8.5e-14 84.7 119 43.7
PGSC0003DMG401029595 Solanum tuberosum HOM05D002037 ORTHO05D021575 7.2e-13 81.6 44 90.9
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 2.7e-12 79.7 48 72.9
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 1.0e-11 77.8 63 61.9
Nitab4.5_0026868g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 3.3e-10 72.8 42 83.3
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 6.3e-09 68.6 33 84.8
Ah.04g156720 Amaranthus hybridus HOM05D002037 ORTHO05D005261 3.8e-06 59.3 39 82.1
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 6.5e-06 58.5 106 68.9


User provided reference genes

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