Gene: Sopen07g015280
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen07g015280
- Transcript Identifier Sopen07g015280.1
- Gene Type Coding gene
- Location Spenn-ch07 : 42166343-42187340 : negative
Gene Family Information
- ID HOM05D000004
- #Genes/#Species 19584/91
- Phylogenetic origin
- ID ORTHO05D000002
- #Genes/#Species 15655/89
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen07g015280.1
Descriptions
- Description Transcription initiation factor IIF, beta subunit | FUNCTIONS IN: RNA polymerase II transcription factor activity, general RNA polymerase II transcription factor activity, catalytic activity, ATP binding, ATP-dependent helicase activity | INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription from RNA polymerase II promoter | LOCATED IN: mitochondrion, transcription factor TFIIF complex | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding , Transcription Factor IIF, Rap30/Rap74, interaction , Transcription initiation factor IIF, beta subunit , Transcription initiation factor IIF, beta subunit, subgroup | BEST Arabidopsis thaliana protein match is: Transcription initiation factor IIF, beta subunit
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006367 | IEA | InterPro | transcription initiation from RNA polymerase II promoter | |
| GO:0006366 | IEA | InterPro | transcription by RNA polymerase II |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005674 | IEA | InterPro | transcription factor TFIIF complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain |
| IPR041577 | Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain |
| IPR011039 | Transcription Factor IIF, Rap30/Rap74, interaction |
| IPR003196 | Transcription initiation factor IIF, beta subunit |
| IPR036388 | Winged helix-like DNA-binding domain superfamily |
| IPR040450 | TFIIF beta subunit, HTH domain |
| IPR036390 | Winged helix DNA-binding domain superfamily |
| IPR040504 | TFIIF, beta subunit, N-terminal |
| IPR000477 | Reverse transcriptase domain |
| IPR043502 | DNA/RNA polymerase superfamily |
| Mapman id | Description |
|---|---|
| 15.3.3.4.2 | RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIf basal transcription factor heterodimer.subunit beta |