Gene: Sopen07g015280

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen07g015280
  • Transcript Identifier Sopen07g015280.1
  • Gene Type Coding gene
  • Location Spenn-ch07 : 42166343-42187340 : negative

Gene Family Information

  • ID HOM05D000004
  • #Genes/#Species 19584/91
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen07g015280.1

Descriptions

  • Description Transcription initiation factor IIF, beta subunit | FUNCTIONS IN: RNA polymerase II transcription factor activity, general RNA polymerase II transcription factor activity, catalytic activity, ATP binding, ATP-dependent helicase activity | INVOLVED IN: transcription initiation from RNA polymerase II promoter, transcription from RNA polymerase II promoter | LOCATED IN: mitochondrion, transcription factor TFIIF complex | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding , Transcription Factor IIF, Rap30/Rap74, interaction , Transcription initiation factor IIF, beta subunit , Transcription initiation factor IIF, beta subunit, subgroup | BEST Arabidopsis thaliana protein match is: Transcription initiation factor IIF, beta subunit
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006367
IEA
InterProtranscription initiation from RNA polymerase II promoter
GO:0006366
IEA
InterProtranscription by RNA polymerase II

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005674
IEA
InterProtranscription factor TFIIF complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR043128 Reverse transcriptase/Diguanylate cyclase domain
IPR041577 Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR011039 Transcription Factor IIF, Rap30/Rap74, interaction
IPR003196 Transcription initiation factor IIF, beta subunit
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR040450 TFIIF beta subunit, HTH domain
IPR036390 Winged helix DNA-binding domain superfamily
IPR040504 TFIIF, beta subunit, N-terminal
IPR000477 Reverse transcriptase domain
IPR043502 DNA/RNA polymerase superfamily
Mapman id Description
15.3.3.4.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIf basal transcription factor heterodimer.subunit beta