Gene: Sopen06g028670

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen06g028670
  • Transcript Identifier Sopen06g028670.1
  • Gene Type Coding gene
  • Location Spenn-ch06 : 55270519-55277339 : negative

Gene Family Information

  • ID HOM05D000234
  • #Genes/#Species 1784/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen06g028670.1

Descriptions

  • Description Encodes an RNA Slicer that selectively recruits microRNAs and siRNAs. There is currently no evidence that AGO1 Slicer is in a high molecular weight RNA-induced silencing complex (RISC). Mutants are defective in post-transcriptional gene silencing and have pleiotropic developmental and morphological defects. Through its action on the regulation of ARF17 expression, the protein regulates genes involved at the cross talk between auxin and light signaling during adventitious root development. AGO1 seems to be targeted for degradation by silencing suppressor F-box-containing proteins from Turnip yellow virus and Cucurbit aphid-borne yellow virus. | ARGONAUTE 1 (AGO1) | CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 , Stem cell self-renewal protein Piwi , Argonaute/Dicer protein, PAZ , Polynucleotidyl transferase, ribonuclease H fold | BEST Arabidopsis thaliana protein match is: Stabilizer of iron transporter SufD / Polynucleotidyl transferase ., Stem cell self-renewal protein Piwi
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010305
ISO
PLAZA Integrative Orthologyleaf vascular tissue pattern formation AT1G48410
GO:0016441
ISO
PLAZA Integrative Orthologyposttranscriptional gene silencing AT1G48410
GO:0010589
ISO
PLAZA Integrative Orthologyleaf proximal/distal pattern formation AT1G48410
GO:0030154
ISO
PLAZA Integrative Orthologycell differentiation AT1G48410
GO:0045087
ISO
PLAZA Integrative Orthologyinnate immune response AT1G48410
GO:0048830
ISO
PLAZA Integrative Orthologyadventitious root development AT1G48410
GO:0009616
ISO
PLAZA Integrative OrthologyRNAi-mediated antiviral immune response AT1G48410
GO:0098542
ISO
PLAZA Integrative Orthologydefense response to other organism AT2G27880
GO:0009965
ISO
PLAZA Integrative Orthologyleaf morphogenesis AT1G48410
GO:0035195
ISO
PLAZA Integrative Orthologygene silencing by miRNA AT1G48410
GO:0051607
ISO
PLAZA Integrative Orthologydefense response to virus AT1G48410
GO:0010218
ISO
PLAZA Integrative Orthologyresponse to far red light AT1G48410
GO:0009733
ISO
PLAZA Integrative Orthologyresponse to auxin AT1G48410
GO:0009955
ISO
PLAZA Integrative Orthologyadaxial/abaxial pattern specification AT1G48410
GO:0009615
ISO
PLAZA Integrative Orthologyresponse to virus AT2G27880
GO:0009850
ISO
PLAZA Integrative Orthologyauxin metabolic process AT1G48410
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT1G48410

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0035198
ISO
PLAZA Integrative OrthologymiRNA binding AT1G48410
GO:0035197
ISO
PLAZA Integrative OrthologysiRNA binding AT1G48410
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G48410
GO:0003723
ISO
PLAZA Integrative OrthologyRNA binding AT2G27880
GO:0004521
ISO
PLAZA Integrative Orthologyendoribonuclease activity AT1G48410
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT1G48410
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G48410
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G48410

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012337 Ribonuclease H-like superfamily
IPR014811 Argonaute, linker 1 domain
IPR003165 Piwi domain
IPR003100 PAZ domain
IPR032474 Protein argonaute, N-terminal
IPR032473 Protein argonaute, Mid domain
IPR036085 PAZ domain superfamily
IPR032472 Argonaute linker 2 domain
IPR024357 Argonaut, glycine-rich domain
IPR036397 Ribonuclease H superfamily
Mapman id Description
16.9.2.7 RNA processing.mRNA silencing.miRNA pathway.miRNA recruiting factor (AGO1/AGO10)