Gene: AT4G24430

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G24430
  • Transcript Identifier AT4G24430.1
  • Gene Type Coding gene
  • Location Chr4 : 12630018-12632975 : positive

Gene Family Information

  • ID HOM05D000583
  • #Genes/#Species 954/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G24430.1
  • uniprot Q9STV1

Descriptions

  • Description Rhamnogalacturonate lyase family protein
  • Computational description Rhamnogalacturonate lyase family protein; FUNCTIONS IN: lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Rhamnogalacturonate lyase (InterPro:IPR010325), Carbohydrate-binding-like fold (InterPro:IPR013784), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Rhamnogalacturonate lyase family protein (TAIR:AT1G09890.1); Has 287 Blast hits to 273 proteins in 60 species: Archae - 0; Bacteria - 42; Metazoa - 0; Fungi - 83; Plants - 162; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005975
IEA
Gene Ontologycarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016829
IEA
GOA Databaselyase activity
GO:0016829
ISS
Gene Ontologylyase activity
GO:0030246
IEA
Gene Ontologycarbohydrate binding
GO:0030246
IEA
InterProcarbohydrate binding
GO:0102210
IEA
Gene Ontologyrhamnogalacturonan endolyase activity
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
IEA
GOA Databaseextracellular region
GO:0005576
ISM
Gene Ontologyextracellular region
GO:0000325
HDA
Gene Ontologyplant-type vacuole1
GO:0005774
IDA
GOA Databasevacuolar membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013784 Carbohydrate-binding-like fold
IPR008979 Galactose-binding-like domain superfamily
IPR014718 Glycoside hydrolase-type carbohydrate-binding
IPR011013 Galactose mutarotase-like domain superfamily
IPR029413 Rhamnogalacturonan lyase, domain II
IPR010325 Rhamnogalacturonate lyase
IPR029411 Rhamnogalacturonan lyase, domain III
Mapman id Description
35.1 not assigned.annotated