Gene: Sopen04g027980

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen04g027980
  • Transcript Identifier Sopen04g027980.1
  • Gene Type Coding gene
  • Location Spenn-ch04 : 69514055-69515719 : negative

Gene Family Information

  • ID HOM05D000242
  • #Genes/#Species 1731/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen04g027980.1

Descriptions

  • Description encodes an EP3 chitinase that is expressed during somatic embryogenesis in nursing cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs. | homolog of carrot EP3-3 chitinase (EP3) | FUNCTIONS IN: chitinase activity | INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response | LOCATED IN: cell wall | EXPRESSED IN: 18 plant structures | EXPRESSED DURING: 6 growth stages | CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site , Glycoside hydrolase, family 19 , Chitin-binding, type 1 , Glycoside hydrolase, family 19, catalytic | BEST Arabidopsis thaliana protein match is: Chitinase family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0050832
ISO
PLAZA Integrative Orthologydefense response to fungus Zm00001eb078730
GO:0072722
ISO
PLAZA Integrative Orthologyresponse to amitrole AT2G43570
GO:0009627
ISO
PLAZA Integrative Orthologysystemic acquired resistance AT2G43570
GO:0009617
ISO
PLAZA Integrative Orthologyresponse to bacterium AT3G54420
GO:0009615
ISO
PLAZA Integrative Orthologyresponse to virus AT2G43570
GO:0009626
ISO
PLAZA Integrative Orthologyplant-type hypersensitive response AT3G54420
GO:0009620
ISO
PLAZA Integrative Orthologyresponse to fungus AT2G43580
GO:0009611
ISO
PLAZA Integrative Orthologyresponse to wounding AT3G54420
GO:0010150
ISO
PLAZA Integrative Orthologyleaf senescence AT2G43570
GO:0006040
ISO
PLAZA Integrative Orthologyamino sugar metabolic process Zm00001eb078730
GO:0010272
ISO
PLAZA Integrative Orthologyresponse to silver ion AT2G43570
GO:0010262
ISO
PLAZA Integrative Orthologysomatic embryogenesis AT3G54420
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0016998
IEA
InterProcell wall macromolecule catabolic process
GO:0006032
IEA
InterProchitin catabolic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G43610
GO:0008843
ISO
PLAZA Integrative Orthologyendochitinase activity Zm00001eb078730
GO:0008061
IEA
InterProchitin binding
GO:0004568
IEA
InterProchitinase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
ISO
PLAZA Integrative Orthologyextracellular region Zm00001eb078730
GO:0048046
ISO
PLAZA Integrative Orthologyapoplast AT2G43620
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT2G43610

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001002 Chitin-binding, type 1
IPR000726 Glycoside hydrolase, family 19, catalytic
IPR023346 Lysozyme-like domain superfamily
IPR016283 Glycoside hydrolase, family 19
IPR036861 Endochitinase-like superfamily
Mapman id Description
35.1 not assigned.annotated