Gene: AT3G54420

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G54420
  • Transcript Identifier AT3G54420.1
  • Gene Type Coding gene
  • Location Chr3 : 20145935-20147034 : positive

Gene Family Information

  • ID HOM05D000242
  • #Genes/#Species 1731/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G54420.1
  • symbol EP3
  • Alias ATCHITIV,CHITINASE CLASS IV,ATEP3,homolog of carrot EP3-3 chitinase,CHIV
  • uniprot Q9M2U5

Descriptions

  • Description homolog of carrot EP3-3 chitinase
  • Computational description homolog of carrot EP3-3 chitinase (EP3); FUNCTIONS IN: chitinase activity; INVOLVED IN: somatic embryogenesis, plant-type hypersensitive response; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site (InterPro:IPR018371), Glycoside hydrolase, family 19 (InterPro:IPR016283), Chitin-binding, type 1 (InterPro:IPR001002), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT2G43590.1); Has 2660 Blast hits to 2432 proteins in 504 species: Archae - 0; Bacteria - 547; Metazoa - 34; Fungi - 178; Plants - 1776; Viruses - 22; Other Eukaryotes - 103 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006032
IEA
GOA Databasechitin catabolic process
GO:0006032
IEA
InterProchitin catabolic process
GO:0016998
IEA
Gene Ontologycell wall macromolecule catabolic process
GO:0016998
IEA
InterProcell wall macromolecule catabolic process
GO:0005975
IEA
GOA Databasecarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0000272
IEA
GOA Databasepolysaccharide catabolic process
GO:0008152
IEA
GOA Databasemetabolic process
GO:0006952
IEA
GOA Databasedefense response
GO:0009626
TAS
Gene Ontologyplant-type hypersensitive response1
GO:0009617
IEP
Gene Ontologyresponse to bacterium1
GO:0009611
IEP
Gene Ontologyresponse to wounding2
GO:0010262
IEP
Gene Ontologysomatic embryogenesis3

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004568
IEA
GOA Databasechitinase activity
GO:0004568
ISS, IBA
Gene Ontologychitinase activity3 4
GO:0004568
IEA
InterProchitinase activity
GO:0008061
IEA
GOA Databasechitin binding
GO:0008061
IEA
InterProchitin binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0016798
IEA
GOA Databasehydrolase activity, acting on glycosyl bonds

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005576
ISM
Gene Ontologyextracellular region
GO:0005618
HDA
Gene Ontologycell wall5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001002 Chitin-binding, type 1
IPR023346 Lysozyme-like domain superfamily
IPR016283 Glycoside hydrolase, family 19
IPR036861 Endochitinase-like superfamily
IPR000726 Glycoside hydrolase, family 19, catalytic
Mapman id Description
35.1 not assigned.annotated