Gene: Sopen04g020670
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen04g020670
- Transcript Identifier Sopen04g020670.1
- Gene Type Coding gene
- Location Spenn-ch04 : 54364714-54383192 : negative
Gene Family Information
- ID HOM05D000004
- #Genes/#Species 19584/91
- Phylogenetic origin
- ID ORTHO05D000002
- #Genes/#Species 15655/89
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen04g020670.1
Descriptions
- Description zinc knuckle (CCHC-type) family protein | FUNCTIONS IN: zinc ion binding, nucleic acid binding | INVOLVED IN: biological_process unknown | LOCATED IN: cellular_component unknown | EXPRESSED IN: 13 plant structures | EXPRESSED DURING: 7 growth stages | CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type , DEK, C-terminal | BEST Arabidopsis thaliana protein match is: transcriptional coactivator p15 (PC4) family protein (KELP)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0008270 | IEA | InterPro | zinc ion binding |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain |
| IPR043502 | DNA/RNA polymerase superfamily |
| IPR041577 | Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain |
| IPR036875 | Zinc finger, CCHC-type superfamily |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR001878 | Zinc finger, CCHC-type |
| IPR005162 | Retrotransposon gag domain |
| IPR036397 | Ribonuclease H superfamily |
| IPR041588 | Integrase zinc-binding domain |
| IPR021109 | Aspartic peptidase domain superfamily |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |