Gene: Sopen03g015220
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen03g015220
- Transcript Identifier Sopen03g015220.1
- Gene Type Coding gene
- Location Spenn-ch03 : 30843109-30861175 : positive
Gene Family Information
- ID HOM05D000004
- #Genes/#Species 19584/91
- Phylogenetic origin
- ID ORTHO05D000002
- #Genes/#Species 15655/89
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen03g015220.1
Descriptions
- Description 5-3 exonuclease family protein | FUNCTIONS IN: 5-3 exonuclease activity, DNA binding, catalytic activity | CONTAINS InterPro DOMAIN/s: 5-3 exonuclease, SAM-fold domain , 5-3 exonuclease, C-terminal subdomain , 5-3 exonuclease, N-terminal , 5-3 exonuclease, N-terminal resolvase-like domain , Helix-hairpin-helix motif, class 2 | BEST Arabidopsis thaliana protein match is: 5-3 exonuclease family protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0015074 | IEA | InterPro | DNA integration |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0003676 | IEA | InterPro | nucleic acid binding |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR043502 | DNA/RNA polymerase superfamily |
| IPR001584 | Integrase, catalytic core |
| IPR021109 | Aspartic peptidase domain superfamily |
| IPR041588 | Integrase zinc-binding domain |
| IPR005162 | Retrotransposon gag domain |
| IPR020045 | DNA polymerase I-like, H3TH domain |
| IPR043128 | Reverse transcriptase/Diguanylate cyclase domain |
| IPR036397 | Ribonuclease H superfamily |
| IPR000477 | Reverse transcriptase domain |
| IPR008918 | Helix-hairpin-helix motif, class 2 |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR041577 | Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain |
| IPR002421 | 5'-3' exonuclease |
| IPR036279 | 5'-3' exonuclease, C-terminal domain superfamily |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |