Gene: AT1G13220
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G13220
- Transcript Identifier AT1G13220.3
- Gene Type Coding gene
- Location Chr1 : 4515660-4520071 : positive
Gene Family Information
- ID HOM05D001377
- #Genes/#Species 454/96
- Phylogenetic origin
- ID ORTHO05D001221
- #Genes/#Species 453/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid AT1G13220.3
- symbol LINC2
- Alias CRWN2,CROWDED NUCLEI 2
- full_name LITTLE NUCLEI2
- uniprot Q9SAF6
Descriptions
- Description nuclear matrix constituent protein-like protein
- Computational description LITTLE NUCLEI2 (LINC2); INVOLVED IN: nucleus organization; LOCATED IN: nucleoplasm; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana protein match is: little nuclei3 (TAIR:AT1G68790.1); Has 107806 Blast hits to 52972 proteins in 2654 species: Archae - 1404; Bacteria - 16181; Metazoa - 50751; Fungi - 7829; Plants - 5203; Viruses - 291; Other Eukaryotes - 26147 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006974 | IGI | Gene Ontology | cellular response to DNA damage stimulus | 1 |
| GO:0006997 | IMP, IGI IEA | Gene Ontology | nucleus organization | 2 3 |
| GO:0006997 | IEA | InterPro | nucleus organization | |
| GO:0097298 | IMP | Gene Ontology | regulation of nucleus size | 3 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0031965 | IEA | GOA Database | nuclear membrane | |
| GO:0005652 | IEA | GOA Database | nuclear lamina | |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | ISM | Gene Ontology | cytoplasm | |
| GO:0005654 | IEA | GOA Database | nucleoplasm | |
| GO:0005654 | IDA | Gene Ontology | nucleoplasm | 2 |
| GO:0034399 | IDA | Gene Ontology | nuclear periphery | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR040418 | Protein crowded nuclei |
| Mapman id | Description |
|---|---|
| 20.4.3.1 | Cytoskeleton organisation.nuclear dynamics.nuclear shape determination.lamin-like protein (CRWN) |