Gene: Sopen02g032110

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen02g032110
  • Transcript Identifier Sopen02g032110.1
  • Gene Type Coding gene
  • Location Spenn-ch02 : 53929800-53937724 : negative

Gene Family Information

  • ID HOM05D000629
  • #Genes/#Species 905/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen02g032110.1

Descriptions

  • Description Encodes a homolog of the transcriptional repressor SIN3 (AT1G24190). | SIN3-like 2 (SNL2) | FUNCTIONS IN: molecular_function unknown | INVOLVED IN: regulation of transcription, DNA-dependent | LOCATED IN: nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting , Paired amphipathic helix | BEST Arabidopsis thaliana protein match is: SIN3-like 1 ., Histone deacetylase interacting
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT1G24190
GO:0045892
ISO
PLAZA Integrative Orthologynegative regulation of transcription, DNA-templated AT1G24190

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003714
IEA
InterProtranscription corepressor activity
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G24230

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT3G01320
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G15020

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
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InterPro Description
IPR003822 Paired amphipathic helix
IPR036600 Paired amphipathic helix superfamily
IPR013194 Histone deacetylase interacting domain
IPR031693 Sin3, C-terminal
IPR039774 Transcriptional regulatory protein Sin3-like
Mapman id Description
12.3.2.1.1.2.2 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.SNL-HDA19 histone deacetylase complex.key scaffold component SNL