Gene: AT1G24190

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G24190
  • Transcript Identifier AT1G24190.2
  • Gene Type Coding gene
  • Location Chr1 : 8563858-8569927 : negative

Gene Family Information

  • ID HOM05D000629
  • #Genes/#Species 905/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G24190.2
  • symbol SNL3
  • Alias ATSIN3,ARABIDOPSIS THALIANA SIN3 HOMOLOG,SIN3,ARABIDOPSIS THALIANA SIN3 HOMOLOG
  • uniprot O48686

Descriptions

  • Description SIN3-like 3
  • Computational description SIN3-like 3 (SNL3); FUNCTIONS IN: transcription repressor activity; INVOLVED IN: negative regulation of transcription, regulation of transcription, DNA-dependent, response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 4 (TAIR:AT1G70060.1); Has 3268 Blast hits to 1788 proteins in 336 species: Archae - 19; Bacteria - 223; Metazoa - 1240; Fungi - 789; Plants - 447; Viruses - 29; Other Eukaryotes - 521 (source: NCBI BLink).
  • Computational description SIN3-like 3 (SNL3); FUNCTIONS IN: transcription repressor activity; INVOLVED IN: negative regulation of transcription, regulation of transcription, DNA-dependent, response to abscisic acid stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 4 (TAIR:AT1G70060.1).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009737
IMP
Gene Ontologyresponse to abscisic acid1
GO:0045892
IDA, IEP
Gene Ontologynegative regulation of transcription, DNA-templated1
GO:0000122
IBA
Gene Ontologynegative regulation of transcription by RNA polymerase II2
GO:0016575
IBA
Gene Ontologyhistone deacetylation2
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003714
IBA
IEA
Gene Ontologytranscription corepressor activity2
GO:0003714
IEA
InterProtranscription corepressor activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0000118
IBA
Gene Ontologyhistone deacetylase complex2
GO:0000785
IBA
Gene Ontologychromatin2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003822 Paired amphipathic helix
IPR036600 Paired amphipathic helix superfamily
IPR031693 Sin3, C-terminal
IPR013194 Histone deacetylase interacting domain
IPR039774 Transcriptional regulatory protein Sin3-like
Mapman id Description
12.3.2.1.1.2.2 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.SNL-HDA19 histone deacetylase complex.key scaffold component SNL