Gene: AT5G15020

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G15020
  • Transcript Identifier AT5G15020.2
  • Gene Type Coding gene
  • Location Chr5 : 4859408-4865569 : negative

Gene Family Information

  • ID HOM05D000629
  • #Genes/#Species 905/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G15020.2
  • symbol SNL2
  • uniprot Q9LFQ3

Descriptions

  • Description SIN3-like 2
  • Computational description SIN3-like 2 (SNL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 1 (TAIR:AT3G01320.1); Has 7665 Blast hits to 4944 proteins in 497 species: Archae - 53; Bacteria - 740; Metazoa - 2798; Fungi - 1391; Plants - 712; Viruses - 253; Other Eukaryotes - 1718 (source: NCBI BLink).
  • Computational description SIN3-like 2 (SNL2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylase interacting (InterPro:IPR013194), Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: SIN3-like 1 (TAIR:AT3G01320.1).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016575
IBA
Gene Ontologyhistone deacetylation1
GO:0000122
IBA
Gene Ontologynegative regulation of transcription by RNA polymerase II1
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003714
IBA
IEA
Gene Ontologytranscription corepressor activity1
GO:0003714
IEA
InterProtranscription corepressor activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0000785
IBA
Gene Ontologychromatin1
GO:0000118
IBA
Gene Ontologyhistone deacetylase complex1
GO:0005829
IDA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036600 Paired amphipathic helix superfamily
IPR003822 Paired amphipathic helix
IPR031693 Sin3, C-terminal
IPR013194 Histone deacetylase interacting domain
IPR039774 Transcriptional regulatory protein Sin3-like
Mapman id Description
12.3.2.1.1.2.2 Chromatin organisation.post-translational histone modification.histone deacetylation.HD1 histone deacetylase family.class-I histone deacetylase activities.SNL-HDA19 histone deacetylase complex.key scaffold component SNL