Gene: Sopen02g020330
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen02g020330
- Transcript Identifier Sopen02g020330.2
- Gene Type Coding gene
- Location Spenn-ch02 : 44120561-44126671 : negative
Gene Family Information
- ID HOM05D000512
- #Genes/#Species 1048/99
- Phylogenetic origin
- ID ORTHO05D000861
- #Genes/#Species 579/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen02g020330.2
Descriptions
- Description A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML5 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML5 is the transcript with highest frequency of alternative splicing. Expression was detected during embryo development (heart and torpedo stage) and in vegetative and floral apices. | MEI2-like protein 5 (ML5) | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | LOCATED IN: cellular_component unknown | EXPRESSED IN: 30 plant structures | EXPRESSED DURING: 16 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , RNA recognition motif 2 , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: MEI2-like 3
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0045927 | ISO | PLAZA Integrative Orthology | positive regulation of growth | AT1G29400 |
| GO:0045836 | ISO | PLAZA Integrative Orthology | positive regulation of meiotic nuclear division | AT1G29400 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT1G29400 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR034453 | MEI2-like, RNA recognition motif 1 |
| IPR007201 | Mei2-like, C-terminal RNA recognition motif |
| IPR035979 | RNA-binding domain superfamily |
| IPR034454 | MEI2-like, RNA recognition motif 3 |
| IPR000504 | RNA recognition motif domain |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |