Gene: AT5G48650

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G48650
  • Transcript Identifier AT5G48650.1
  • Gene Type Coding gene
  • Location Chr5 : 19727279-19729533 : positive

Gene Family Information

  • ID HOM05D000622
  • #Genes/#Species 916/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G48650.1
  • uniprot Q84JH2

Descriptions

  • Description Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein
  • Computational description Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: transport, nucleocytoplasmic transport; LOCATED IN: endomembrane system, intracellular; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear transport factor 2 (InterPro:IPR002075), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nuclear transport factor 2, Eukaryote (InterPro:IPR018222), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain (TAIR:AT3G25150.1); Has 3431 Blast hits to 3335 proteins in 383 species: Archae - 4; Bacteria - 254; Metazoa - 1514; Fungi - 549; Plants - 825; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090332
IMP
Gene Ontologystomatal closure1
GO:1900425
IMP
Gene Ontologynegative regulation of defense response to bacterium1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IBA
Gene OntologymRNA binding2
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IDA
ISM
Gene Ontologycytoplasm1
GO:1990904
IBA
Gene Ontologyribonucleoprotein complex2
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
IBA
Gene Ontologycytosol2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR032710 NTF2-like domain superfamily
IPR018222 Nuclear transport factor 2, eukaryote
IPR002075 Nuclear transport factor 2
IPR035979 RNA-binding domain superfamily
IPR039539 Ras GTPase-activating protein-binding protein
Mapman id Description
16.8.1 RNA processing.mRNA sequestration.mRNA endoribonuclease (G3BP)