Gene: Sopen01g052300

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen01g052300
  • Transcript Identifier Sopen01g052300.1
  • Gene Type Coding gene
  • Location Spenn-ch01 : 107763778-107765341 : negative

Gene Family Information

  • ID HOM05D000711
  • #Genes/#Species 809/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen01g052300.1

Descriptions

  • Description A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. | SHI-related sequence 5 (SRS5) | CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal , Zinc finger, Lateral Root Primordium type 1 , Protein of unknown function DUF702 | BEST Arabidopsis thaliana protein match is: SHI-related sequence 7
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048480
ISO
PLAZA Integrative Orthologystigma development AT3G51060
GO:0045893
ISO
PLAZA Integrative Orthologypositive regulation of transcription, DNA-templated AT3G51060
GO:0048653
ISO
PLAZA Integrative Orthologyanther development AT1G75520
GO:0048467
ISO
PLAZA Integrative Orthologygynoecium development AT1G75520
GO:0009739
ISO
PLAZA Integrative Orthologyresponse to gibberellin AT5G66350
GO:0010252
ISO
PLAZA Integrative Orthologyauxin homeostasis AT3G51060
GO:0009938
ISO
PLAZA Integrative Orthologynegative regulation of gibberellic acid mediated signaling pathway AT5G66350
GO:0009740
ISO
PLAZA Integrative Orthologygibberellic acid mediated signaling pathway AT5G66350
GO:0048479
ISO
PLAZA Integrative Orthologystyle development AT3G51060
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT1G75520
GO:0010051
ISO
PLAZA Integrative Orthologyxylem and phloem pattern formation AT3G51060
GO:0009299
ISO
PLAZA Integrative OrthologymRNA transcription AT1G19790
GO:0009640
ISO
PLAZA Integrative Orthologyphotomorphogenesis AT1G75520

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0046982
ISO
PLAZA Integrative Orthologyprotein heterodimerization activity AT3G51060
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G75520
GO:0003700
ISO
PLAZA Integrative OrthologyDNA-binding transcription factor activity AT1G75520
GO:0003677
ISO
PLAZA Integrative OrthologyDNA binding AT3G51060
GO:0043565
ISO
PLAZA Integrative Orthologysequence-specific DNA binding AT1G75520
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT5G66350

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G75520

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007818 SHI protein family
IPR006511 SHORT INTERNODES, C-terminal
IPR006510 Zinc finger, lateral root primordium type 1
Mapman id Description
15.5.45 RNA biosynthesis.transcriptional regulation.transcription factor (SRS)