Gene: AT1G19790

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G19790
  • Transcript Identifier AT1G19790.2
  • Gene Type Coding gene
  • Location Chr1 : 6838400-6839831 : negative

Gene Family Information

  • ID HOM05D000711
  • #Genes/#Species 809/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G19790.2
  • symbol SRS7
  • uniprot Q9FXH7

Descriptions

  • Description SHI-related sequence 7
  • Computational description SHI-related sequence 7 (SRS7); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 5 (TAIR:AT1G75520.1); Has 184 Blast hits to 184 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 8; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
  • Computational description SHI-related sequence 7 (SRS7); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 5 (TAIR:AT1G75520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009299
IDA
Gene OntologymRNA transcription1
GO:0045893
IBA
Gene Ontologypositive regulation of transcription, DNA-templated2
GO:0009734
IEA
GOA Databaseauxin-activated signaling pathway
GO:0009851
IEA
GOA Databaseauxin biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding3
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IBA
Gene OntologyDNA binding2
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISM, IBA
Gene Ontologynucleus1 2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006511 SHORT INTERNODES, C-terminal
IPR006510 Zinc finger, lateral root primordium type 1
IPR007818 SHI protein family
Mapman id Description
15.5.45 RNA biosynthesis.transcriptional regulation.transcription factor (SRS)