Gene: AT5G66350

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G66350
  • Transcript Identifier AT5G66350.2
  • Gene Type Coding gene
  • Location Chr5 : 26503256-26506143 : negative

Gene Family Information

  • ID HOM05D000711
  • #Genes/#Species 809/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G66350.2
  • symbol SHI
  • full_name SHORT INTERNODES
  • uniprot Q9XGX0

Descriptions

  • Description Lateral root primordium (LRP) protein-like protein
  • Computational description SHORT INTERNODES (SHI); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: Lateral root primordium (LRP) protein-related (TAIR:AT3G51060.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048653
IGI
Gene Ontologyanther development1
GO:0009851
IEA
GOA Databaseauxin biosynthetic process
GO:0009740
IEA
GOA Databasegibberellic acid mediated signaling pathway
GO:0009740
TAS
Gene Ontologygibberellic acid mediated signaling pathway2
GO:0009734
IEA
GOA Databaseauxin-activated signaling pathway
GO:0045893
IBA
Gene Ontologypositive regulation of transcription, DNA-templated3
GO:0009555
IGI
Gene Ontologypollen development1
GO:0009938
IDA
Gene Ontologynegative regulation of gibberellic acid mediated signaling pathway4
GO:0009739
IMP
Gene Ontologyresponse to gibberellin2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IBA
Gene OntologyDNA binding3
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0000976
IPI
Gene Ontologytranscription cis-regulatory region binding5
GO:0005515
IPI
Gene Ontologyprotein binding6
GO:0046982
IPI
Gene Ontologyprotein heterodimerization activity7
GO:0003700
TAS
Gene OntologyDNA-binding transcription factor activity2

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISS, ISM, IBA
TAS
Gene Ontologynucleus2 3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006511 SHORT INTERNODES, C-terminal
IPR006510 Zinc finger, lateral root primordium type 1
IPR007818 SHI protein family
Mapman id Description
15.5.45 RNA biosynthesis.transcriptional regulation.transcription factor (SRS)