Gene: AT1G75520

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G75520
  • Transcript Identifier AT1G75520.1
  • Gene Type Coding gene
  • Location Chr1 : 28351779-28353179 : negative

Gene Family Information

  • ID HOM05D000711
  • #Genes/#Species 809/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G75520.1
  • symbol SRS5
  • uniprot Q9LQZ5

Descriptions

  • Description SHI-related sequence 5
  • Computational description SHI-related sequence 5 (SRS5); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 7 (TAIR:AT1G19790.2); Has 299 Blast hits to 299 proteins in 34 species: Archae - 0; Bacteria - 2; Metazoa - 11; Fungi - 2; Plants - 180; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009851
IEA
GOA Databaseauxin biosynthetic process
GO:0009734
IEA
GOA Databaseauxin-activated signaling pathway
GO:0045893
IBA
Gene Ontologypositive regulation of transcription, DNA-templated1
GO:0009640
IGI
Gene Ontologyphotomorphogenesis2
GO:0048653
IGI
Gene Ontologyanther development3
GO:0009555
IGI
Gene Ontologypollen development3
GO:0048467
IGI
Gene Ontologygynoecium development4

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0043565
IDA
Gene Ontologysequence-specific DNA binding2
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003677
IBA
Gene OntologyDNA binding1
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003700
IDA
Gene OntologyDNA-binding transcription factor activity2
GO:0005515
IPI
Gene Ontologyprotein binding5

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
IDA
ISS, ISM, IBA
Gene Ontologynucleus1 2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006510 Zinc finger, lateral root primordium type 1
IPR007818 SHI protein family
IPR006511 SHORT INTERNODES, C-terminal
Mapman id Description
15.5.45 RNA biosynthesis.transcriptional regulation.transcription factor (SRS)