Gene: Sopen01g037770
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen01g037770
- Transcript Identifier Sopen01g037770.1
- Gene Type Coding gene
- Location Spenn-ch01 : 95791229-95796182 : negative
Gene Family Information
- ID HOM05D000042
- #Genes/#Species 4894/100
- Phylogenetic origin
- ID ORTHO05D000028
- #Genes/#Species 3637/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen01g037770.1
Descriptions
- Description MADS-box transcription factor 6 (OsMADS6) - Oryza sativa (Rice), sequence suggests this encodes a MADS-box transcription factor | AGAMOUS-like 6 (AGL6) | FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: vegetative to reproductive phase transition of meristem, floral organ development | LOCATED IN: nucleus | EXPRESSED IN: 8 plant structures | EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage | CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box , Transcription factor, K-box | BEST Arabidopsis thaliana protein match is: AGAMOUS-like 13
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009555 | ISO | PLAZA Integrative Orthology | pollen development | AT3G61120 |
| GO:0048481 | ISO | PLAZA Integrative Orthology | plant ovule development | AT3G61120 |
| GO:0010228 | ISO | PLAZA Integrative Orthology | vegetative to reproductive phase transition of meristem | AT2G45650 |
| GO:0010468 | ISO | PLAZA Integrative Orthology | regulation of gene expression | AT3G61120 |
| GO:0048455 | ISO | PLAZA Integrative Orthology | stamen formation | Os02g0682200 |
| GO:0048444 | ISO | PLAZA Integrative Orthology | floral organ morphogenesis | Os04g0580700 |
| GO:0045893 | ISO | PLAZA Integrative Orthology | positive regulation of transcription, DNA-templated | Os04g0580700 |
| GO:0009911 | ISO | PLAZA Integrative Orthology | positive regulation of flower development | AT2G45650 |
| GO:0009553 | ISO | PLAZA Integrative Orthology | embryo sac development | Os02g0682200 |
| GO:0048457 | ISO | PLAZA Integrative Orthology | floral whorl morphogenesis | Os02g0682200 |
| GO:0048833 | ISO | PLAZA Integrative Orthology | specification of floral organ number | Os02g0682200 |
| GO:0048459 | ISO | PLAZA Integrative Orthology | floral whorl structural organization | Os02g0682200 |
| GO:0048316 | ISO | PLAZA Integrative Orthology | seed development | Os02g0682200 |
| GO:0048437 | ISO | PLAZA Integrative Orthology | floral organ development | AT2G45650 |
| GO:0048449 | ISO | PLAZA Integrative Orthology | floral organ formation | Os02g0682200 |
| GO:0080112 | ISO | PLAZA Integrative Orthology | seed growth | Os02g0682200 |
| GO:0010094 | ISO | PLAZA Integrative Orthology | specification of carpel identity | Os02g0682200 |
| GO:0010093 | ISO | PLAZA Integrative Orthology | specification of floral organ identity | Os04g0580700 |
| GO:0048509 | ISO | PLAZA Integrative Orthology | regulation of meristem development | Os02g0682200 |
| GO:0010582 | ISO | PLAZA Integrative Orthology | floral meristem determinacy | Os02g0682200 |
| GO:0010022 | ISO | PLAZA Integrative Orthology | meristem determinacy | Os02g0682200 |
| GO:0080060 | ISO | PLAZA Integrative Orthology | integument development | Os02g0682200 |
| GO:0045944 | IEA | InterPro | positive regulation of transcription by RNA polymerase II | |
| GO:0006355 | IEA | InterPro | regulation of transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G61120 |
| GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT2G45650 |
| GO:0003700 | IEA | InterPro | DNA-binding transcription factor activity | |
| GO:0000977 | IEA | InterPro | RNA polymerase II transcription regulatory region sequence-specific DNA binding | |
| GO:0046983 | IEA | InterPro | protein dimerization activity | |
| GO:0003677 | IEA | InterPro | DNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 15.5.14 | RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL) |