Gene: Solyc11g072730.2
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc11g072730.2
- Transcript Identifier Solyc11g072730.2.1
- Gene Type Coding gene
- Location SL4.0ch11 : 53990016-54019679 : negative
Gene Family Information
- ID HOM05D000228
- #Genes/#Species 1809/100
- Phylogenetic origin
- ID ORTHO05D001545
- #Genes/#Species 391/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc11g072730.2.1
- uniprot A0A3Q7JQM0
- gene_id Solyc11g072730
Descriptions
- Description DNA-directed RNA polymerase subunit (AHRD V3.3 *** A0A1U8F5N3_CAPAN)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006351 | IEA | GOA Database | transcription, DNA-templated | |
| GO:0006351 | IEA | InterPro | transcription, DNA-templated |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0003899 | IBA IEA | GOA Database | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0003899 | IEA | InterPro | DNA-directed 5'-3' RNA polymerase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0016779 | IEA | GOA Database | nucleotidyltransferase activity | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT4G35800 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005666 | IBA | GOA Database | RNA polymerase III complex | |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT4G35800 |
| GO:0005773 | ISO | PLAZA Integrative Orthology | vacuole | AT4G35800 |
| GO:0005665 | ISO | PLAZA Integrative Orthology | RNA polymerase II, core complex | AT4G35800 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR044893 | RNA polymerase Rpb1, clamp domain superfamily |
| IPR007080 | RNA polymerase Rpb1, domain 1 |
| IPR006592 | RNA polymerase, N-terminal |
| IPR007083 | RNA polymerase Rpb1, domain 4 |
| IPR038120 | RNA polymerase Rpb1, funnel domain superfamily |
| IPR042102 | RNA polymerase Rpb1, domain 3 superfamily |
| IPR000722 | RNA polymerase, alpha subunit |
| IPR035698 | DNA-directed RNA polymerase III subunit RPC1, C-terminal |
| IPR035697 | DNA-directed RNA polymerase III subunit RPC1, N-terminal |
| IPR007066 | RNA polymerase Rpb1, domain 3 |
| IPR007081 | RNA polymerase Rpb1, domain 5 |
| Mapman id | Description |
|---|---|
| 15.1.3.1 | RNA biosynthesis.DNA-dependent RNA polymerase (Pol) complexes.Pol III catalytic components.subunit 1 |