Gene: Solyc11g007160.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc11g007160.2
  • Transcript Identifier Solyc11g007160.2.1
  • Gene Type Coding gene
  • Location SL4.0ch11 : 1635369-1638783 : positive

Gene Family Information

  • ID HOM05D001197
  • #Genes/#Species 523/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc11g007160.2.1
  • uniprot A0A3Q7IPQ4
  • gene_id Solyc11g007160

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD V3.3 *** A0A1I9LPX6_ARATH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1900871
ISO
PLAZA Integrative Orthologychloroplast mRNA modification Zm00001eb253560
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT3G20930
GO:0080156
IBA
GOA Databasemitochondrial mRNA modification
GO:0016554
IEA
GOA Databasecytidine to uridine editing
GO:0016554
IEA
InterProcytidine to uridine editing
GO:0055085
IEA
GOA Databasetransmembrane transport
GO:0006817
IEA
GOA Databasephosphate ion transport

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008270
IEA
GOA Databasezinc ion binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT3G20930
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT3G20930
GO:0022857
IEA
GOA Databasetransmembrane transporter activity
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005739
IBA
GOA Databasemitochondrion
GO:0016020
IEA
GOA Databasemembrane
GO:0016021
IEA
GOA Databaseintegral component of membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily
IPR039206 MORF/ORRM1/DAG-like
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
16.11.3.3.2 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.RNA editing factor (ORRM)