Gene: Solyc11g007160.2
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc11g007160.2
- Transcript Identifier Solyc11g007160.2.1
- Gene Type Coding gene
- Location SL4.0ch11 : 1635369-1638783 : positive
Gene Family Information
- ID HOM05D001197
- #Genes/#Species 523/92
- Phylogenetic origin
- ID ORTHO05D008702
- #Genes/#Species 115/83
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc11g007160.2.1
- uniprot A0A3Q7IPQ4
- gene_id Solyc11g007160
Descriptions
- Description RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD V3.3 *** A0A1I9LPX6_ARATH)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:1900871 | ISO | PLAZA Integrative Orthology | chloroplast mRNA modification | Zm00001eb253560 |
GO:0009409 | ISO | PLAZA Integrative Orthology | response to cold | AT3G20930 |
GO:0080156 | IBA | GOA Database | mitochondrial mRNA modification | |
GO:0016554 | IEA | GOA Database | cytidine to uridine editing | |
GO:0016554 | IEA | InterPro | cytidine to uridine editing | |
GO:0055085 | IEA | GOA Database | transmembrane transport | |
GO:0006817 | IEA | GOA Database | phosphate ion transport |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0008270 | IEA | GOA Database | zinc ion binding | |
GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT3G20930 |
GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G20930 |
GO:0022857 | IEA | GOA Database | transmembrane transporter activity | |
GO:0003676 | IEA | GOA Database | nucleic acid binding | |
GO:0003676 | IEA | InterPro | nucleic acid binding | |
GO:0046872 | IEA | GOA Database | metal ion binding | |
GO:0003723 | IEA | GOA Database | RNA binding |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005739 | IBA | GOA Database | mitochondrion | |
GO:0016020 | IEA | GOA Database | membrane | |
GO:0016021 | IEA | GOA Database | integral component of membrane |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
16.11.3.3.2 | RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.RNA editing factor (ORRM) |