Gene: AT3G20930

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G20930
  • Transcript Identifier AT3G20930.1
  • Gene Type Coding gene
  • Location Chr3 : 7331739-7333749 : positive

Gene Family Information

  • ID HOM05D001197
  • #Genes/#Species 523/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G20930.1
  • Alias ORRM1,Organelle RRM protein 1
  • uniprot Q8L440

Descriptions

  • Description RNA-binding (RRM/RBD/RNP motifs) family protein
  • Computational description RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: plastid developmental protein DAG, putative (TAIR:AT1G32580.1); Has 19538 Blast hits to 16159 proteins in 695 species: Archae - 6; Bacteria - 989; Metazoa - 10059; Fungi - 2542; Plants - 4206; Viruses - 0; Other Eukaryotes - 1736 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016554
IEA
Gene Ontologycytidine to uridine editing
GO:0016554
IEA
InterProcytidine to uridine editing
GO:1900871
IMP
Gene Ontologychloroplast mRNA modification1
GO:0009409
IMP
Gene Ontologyresponse to cold2
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0080156
IBA
GOA Databasemitochondrial mRNA modification

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IDA
Gene OntologyRNA binding1
GO:0005515
IPI
Gene Ontologyprotein binding1
GO:0003729
IDA
Gene OntologymRNA binding3
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
ISM
Gene Ontologychloroplast
GO:0009536
IEA
GOA Databaseplastid
GO:0005739
IBA
GOA Databasemitochondrion

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily
IPR039206 MORF/ORRM1/DAG-like
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
Mapman id Description
16.11.3.3.2 RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.RNA editing factor (ORRM)