Gene: Solyc09g082830.4
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc09g082830.4
- Transcript Identifier Solyc09g082830.4.1
- Gene Type Coding gene
- Location SL4.0ch09 : 64591646-64597799 : negative
Gene Family Information
- ID HOM05D000234
- #Genes/#Species 1784/99
- Phylogenetic origin
- ID ORTHO05D000335
- #Genes/#Species 1094/99
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc09g082830.4.1
- uniprot A0A3Q7I7U8
- gene_id Solyc09g082830
Descriptions
- Description Argonaute 10a
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031047 | IEA | GOA Database | gene silencing by RNA | |
| GO:0031047 | IDA | Gene Ontology | gene silencing by RNA | 1 |
| GO:1902183 | ISO | PLAZA Integrative Orthology | regulation of shoot apical meristem development | AT5G43810 |
| GO:0019827 | ISO | PLAZA Integrative Orthology | stem cell population maintenance | Os06g0597400 |
| GO:0048366 | ISO | PLAZA Integrative Orthology | leaf development | Os06g0597400 |
| GO:0035019 | ISO | PLAZA Integrative Orthology | somatic stem cell population maintenance | AT5G43810 |
| GO:0051607 | ISO | PLAZA Integrative Orthology | defense response to virus | AT5G43810 |
| GO:0009934 | ISO | PLAZA Integrative Orthology | regulation of meristem structural organization | AT5G43810 |
| GO:0010586 | ISO | PLAZA Integrative Orthology | miRNA metabolic process | AT5G43810 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0035198 | ISO | PLAZA Integrative Orthology | miRNA binding | AT5G43810 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT5G43810 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR003100 | PAZ domain |
| IPR032472 | Argonaute linker 2 domain |
| IPR014811 | Argonaute, linker 1 domain |
| IPR036397 | Ribonuclease H superfamily |
| IPR003165 | Piwi domain |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR032473 | Protein argonaute, Mid domain |
| IPR036085 | PAZ domain superfamily |
| IPR032474 | Protein argonaute, N-terminal |
| Mapman id | Description |
|---|---|
| 16.9.2.7 | RNA processing.mRNA silencing.miRNA pathway.miRNA recruiting factor (AGO1/AGO10) |