Gene: Solyc02g030490.2

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc02g030490.2
  • Transcript Identifier Solyc02g030490.2.1
  • Gene Type Coding gene
  • Location SL4.0ch02 : 24819271-24820697 : positive

Gene Family Information

  • ID HOM05D000622
  • #Genes/#Species 916/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc02g030490.2.1
  • uniprot A0A3Q7EWH1
  • gene_id Solyc02g030490

Descriptions

  • Description Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein (AHRD V3.3 *-* F4K1Y4_ARATH)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT5G60980
GO:0090332
ISO
PLAZA Integrative Orthologystomatal closure AT5G48650
GO:1900425
ISO
PLAZA Integrative Orthologynegative regulation of defense response to bacterium AT5G48650

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003729
IBA
GOA DatabasemRNA binding
GO:0003676
ISO
PLAZA Homology (enrichment)nucleic acid binding HOM05D000622
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G60980

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IBA
GOA Databasecytosol
GO:1990904
IBA
GOA Databaseribonucleoprotein complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G60980
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT3G07250
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT5G48650

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR039539 Ras GTPase-activating protein-binding protein
IPR002075 Nuclear transport factor 2
IPR032710 NTF2-like domain superfamily
Mapman id Description
16.8.1 RNA processing.mRNA sequestration.mRNA endoribonuclease (G3BP)