Gene: Pp3c6_29320

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c6_29320
  • Transcript Identifier Pp3c6_29320V3.4
  • Gene Type Coding gene
  • Location Chr06 : 19183985-19189466 : positive

Gene Family Information

  • ID HOM05D000835
  • #Genes/#Species 712/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c6_29320V3.4
  • pacid 32977966
  • alias Pp1s117_138V6
  • alias Phpat.006G105500
  • alias Phypa_106976
  • uniprot A9STM2

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IBA
GOA DatabasemRNA splicing, via spliceosome
GO:0048437
ISO
PLAZA Integrative Orthologyfloral organ development AT1G06220
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT1G06220
GO:0045694
ISO
PLAZA Integrative Orthologyregulation of embryo sac egg cell differentiation AT1G06220
GO:0008380
IEA
GOA DatabaseRNA splicing
GO:0006397
IEA
GOA DatabasemRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G06220
GO:0005525
IEA
GOA DatabaseGTP binding
GO:0005525
IEA
InterProGTP binding
GO:0030623
IBA
GOA DatabaseU5 snRNA binding
GO:0003924
IBA
IEA
GOA DatabaseGTPase activity
GO:0003924
IEA
InterProGTPase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005886
ISO
PLAZA Integrative Orthologyplasma membrane AT1G06220
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT5G25230
GO:0005618
ISO
PLAZA Integrative Orthologycell wall AT1G06220
GO:0016607
ISO
PLAZA Integrative Orthologynuclear speck AT1G06220
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT5G25230
GO:1990904
IBA
GOA Databaseribonucleoprotein complex
GO:0046540
IBA
GOA DatabaseU4/U6 x U5 tri-snRNP complex
GO:0071007
IBA
GOA DatabaseU2-type catalytic step 2 spliceosome
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR004161 Translation elongation factor EFTu-like, domain 2
IPR035655 116kDa U5 small nuclear ribonucleoprotein component, C-terminal
IPR000795 Translational (tr)-type GTP-binding domain
IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup
IPR035647 EF-G domain III/V-like
IPR000640 Elongation factor EFG, domain V-like
IPR009000 Translation protein, beta-barrel domain superfamily
IPR031950 116kDa U5 small nuclear ribonucleoprotein component, N-terminal
IPR005517 Translation elongation factor EFG/EF2, domain IV
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR020568 Ribosomal protein S5 domain 2-type fold
IPR005225 Small GTP-binding protein domain
IPR044121 Snu114, GTP-binding domain
Mapman id Description
16.2.1.4.2 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (SNU114/U5-116kDa)