Gene: Pp3c5_20100
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c5_20100
- Transcript Identifier Pp3c5_20100V3.2
- Gene Type Coding gene
- Location Chr05 : 14123365-14125327 : negative
Gene Family Information
- ID HOM05D000282
- #Genes/#Species 1541/100
- Phylogenetic origin
- ID ORTHO05D000272
- #Genes/#Species 1231/98
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- name Pp3c5_20100V3.2
- pacid 32954414
- alias Phypa_165677
- alias Pp1s93_136V6
- alias Phpat.005G073500
- uniprot A0A2K1KKE2
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009409 | ISO | PLAZA Integrative Orthology | response to cold | AT5G12250 |
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT2G29550 |
| GO:0009416 | ISO | PLAZA Integrative Orthology | response to light stimulus | AT1G75780 |
| GO:0009826 | ISO | PLAZA Integrative Orthology | unidimensional cell growth | AT1G75780 |
| GO:0007017 | IEA | GOA Database | microtubule-based process | |
| GO:0007017 | IEA | InterPro | microtubule-based process | |
| GO:0000226 | IBA | GOA Database | microtubule cytoskeleton organization | |
| GO:0000278 | IBA | GOA Database | mitotic cell cycle |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005200 | IBA IEA | GOA Database | structural constituent of cytoskeleton | |
| GO:0005200 | IEA | InterPro | structural constituent of cytoskeleton | |
| GO:0005525 | IBA IEA | GOA Database | GTP binding | |
| GO:0005525 | IEA | InterPro | GTP binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G20010 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G12250 |
| GO:0003924 | IEA | GOA Database | GTPase activity | |
| GO:0003924 | IEA | InterPro | GTPase activity | |
| GO:0000166 | IEA | GOA Database | nucleotide binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009570 | ISO | PLAZA Integrative Orthology | chloroplast stroma | AT1G20010 |
| GO:0005794 | ISO | PLAZA Integrative Orthology | Golgi apparatus | AT2G29550 |
| GO:0005774 | ISO | PLAZA Integrative Orthology | vacuolar membrane | AT1G20010 |
| GO:0005773 | ISO | PLAZA Integrative Orthology | vacuole | AT1G75780 |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT5G12250 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT4G20890 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT2G29550 |
| GO:0045298 | ISO | PLAZA Integrative Orthology | tubulin complex | AT5G62700 |
| GO:0005618 | ISO | PLAZA Integrative Orthology | cell wall | AT1G20010 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT2G29550 |
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0005874 | IBA IEA | GOA Database | microtubule | |
| GO:0005874 | IEA | InterPro | microtubule | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0005737 | IBA | GOA Database | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR023123 | Tubulin, C-terminal |
| IPR018316 | Tubulin/FtsZ, 2-layer sandwich domain |
| IPR000217 | Tubulin |
| IPR002453 | Beta tubulin |
| IPR036525 | Tubulin/FtsZ, GTPase domain superfamily |
| IPR003008 | Tubulin/FtsZ, GTPase domain |
| IPR008280 | Tubulin/FtsZ, C-terminal |
| IPR037103 | Tubulin/FtsZ-like, C-terminal domain |
| Mapman id | Description |
|---|---|
| 20.1.1.2 | Cytoskeleton organisation.microtubular network.alpha-beta-Tubulin heterodimer.component beta-Tubulin |